View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_19 (Length: 407)
Name: NF18717_low_19
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 407
Target Start/End: Original strand, 44923660 - 44924033
Alignment:
| Q |
5 |
gaggagcagagattcaaagccagtacttatgggtgttatcatggggtgacaaccaaccttgaaccttgacagattggacgcacacaaaagtgcaacaatt |
104 |
Q |
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| T |
44923660 |
gaggagctgagattcgaagccagtactta-gggtgttatcatggggtgacaaccaaccttgaaccttgacagattggacgcacacaaaagtgcaacaatt |
44923758 |
T |
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| Q |
105 |
tcaaggacgcattcatcagtttgatgaacaaggagagtagcgtaaccaccttgatcaaggtatgcgtgctacttaggtaaggatccagagggatattccc |
204 |
Q |
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| T |
44923759 |
tcaaggacgcattcatcagtttgatgaacaaggagagtagcgtaaccaccttgatcaaggtatgcgtgctacttaggtaaggatccagagggtaattccc |
44923858 |
T |
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| Q |
205 |
tttctttgaacaaagaaggtggattaaaagatgtgattttctatgttgcaactaccagcaagaaaatgaaacttatgtcctttctaacagacaccttagg |
304 |
Q |
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| T |
44923859 |
tttctttgaacaaagaag--------------gtgattttctatgttgcaactaccagcaagaaaa--------------tctctaacagacacctgagg |
44923930 |
T |
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| Q |
305 |
gagttgtggtaaacaaacagatggacttgtgttttgtggcacatgaacatgagcatttccaggataaacaaacatacaccacagatttgattgaactaat |
404 |
Q |
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| T |
44923931 |
gagttgtggtaaacaaacagatggacttgtgttttgtggcacatgaacatgagcatttccaggataaacaaacatacaccacagatttgattgaactaat |
44924030 |
T |
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