View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18717_low_2 (Length: 904)
Name: NF18717_low_2
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 712; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 16 - 884
Target Start/End: Original strand, 2343679 - 2344561
Alignment:
| Q |
16 |
attaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaagtaatggaacatgcactgaaggtgctgctgctacttgcactt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2343679 |
attaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaagtaatggaacatgcactgaaggtgctgctgctacttgcactt |
2343778 |
T |
|
| Q |
116 |
ctgctacaggaatacagtaagatatgtaatactttggtggaggatcacttctctcaaattttgtcaattaattctccatacattattgttatgagttttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2343779 |
ctgctacaggaatacagtaagatatgtaatactttggtggaggatcacttctctcaaattttgtcatttaattctccatacattattgttatgagttttt |
2343878 |
T |
|
| Q |
216 |
agtggnnnnnnnnnnccatgtttattgctagagattctcaaagagtagagtagagagcatagctgaaaagggttgtgagagtacttagccgaatatcctt |
315 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2343879 |
agtggttttttttttccatgtttattgctagagattctcaaagagtagagtagagagcatagctgaaaagggttgtgagagtacttagccgaatatcctt |
2343978 |
T |
|
| Q |
316 |
ggctggcttacgtcttagccgaataccggattaccagggcccttttcccctggaaatcagagggtaaagacnnnnnnnggcctagtttccttctattatt |
415 |
Q |
| |
|
|||| |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
2343979 |
ggct----tacgtcttagccaattaccggattaccagggcccttttcccctggaaatcaaagggtaaagacaaaaaaaggcctagtttccttctattatt |
2344074 |
T |
|
| Q |
416 |
acggacgctgtccataatggcacaagttctgtagcctttagtttcttgaatgcaggataattgttgctgacagcaacttgctgttgtgctcaatgcccta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344075 |
acggacgctgtccataatggcacaagttctgtagcctttagtttcttgaatgcaggataattgttgctgacagcaacttgctgttgtgctcaatgcccta |
2344174 |
T |
|
| Q |
516 |
atgttaatattgtaacatgc------------------aatttaatagtttttaactatttgtctcgttgtctgcaggtgggattttaagttgaacaatt |
597 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2344175 |
atgttaatattgtaacatgcggaagtagattaaaatgcaatttaatagtttttaactatttgtctcgttgtctgcaggggggattttaagttgaacaatt |
2344274 |
T |
|
| Q |
598 |
ttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgt |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344275 |
ttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgcgtctctagctaagaggtaattaggatagccattcgt |
2344374 |
T |
|
| Q |
698 |
gttgcaatcagtttgaaacctattcatattattagatacttttgttactttaaacattaaatgtcataagaatcctttctcacaattcatgtattttgca |
797 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2344375 |
gttgcaatcagtttgaaacctattcatactattagatacttttgttagcttaaacattaaatgtcataagaatcctttctcacaattcatgtatttcgca |
2344474 |
T |
|
| Q |
798 |
gtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
884 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344475 |
gtgtcaatccatttaaacttataggatccggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
2344561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 570 - 735
Target Start/End: Original strand, 2336997 - 2337162
Alignment:
| Q |
570 |
tgcaggtgggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctag |
669 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2336997 |
tgcaggggggattttaaattgaacaattttgaagatggagttttgtcatctgcttttatggttggacttctcgtggcttctccaatatttgcctctctag |
2337096 |
T |
|
| Q |
670 |
ctaagaggtaattaggatagccattcgtgttgcaatcagtttgaaacctattcatattattagata |
735 |
Q |
| |
|
|| |||||||||||| ||| |||||| |||| |||||| | |||||||||||| |||||||||||| |
|
|
| T |
2337097 |
ctcagaggtaattagaataaccattcatgttccaatcaatatgaaacctattcttattattagata |
2337162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 2323267 - 2323354
Alignment:
| Q |
53 |
ctagcaatggtgttaatggaagtaatggaacatgcactgaaggtgctgctgctacttgcacttctgctacaggaatacagtaagatat |
140 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2323267 |
ctagcaatggtgttaatggaagtaagggaacgtgcactgaaggtgctgctgctacttgcacttctactacgggaatacagtaagatat |
2323354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 752 - 884
Target Start/End: Original strand, 2337536 - 2337668
Alignment:
| Q |
752 |
cattaaatgtcataagaatcctttctcacaattcatgtattttgcagtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaa |
851 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | ||||| || || | |
|
|
| T |
2337536 |
cattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatccatttagacttgtaggagttggattgtcggtgtggactcttgcga |
2337635 |
T |
|
| Q |
852 |
ccttcttctgtggtttttcttttaatttctggt |
884 |
Q |
| |
|
||||||| || ||||||||||| |||||||||| |
|
|
| T |
2337636 |
ccttcttttgcggtttttctttcaatttctggt |
2337668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 2336268 - 2336328
Alignment:
| Q |
16 |
attaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaagta |
76 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2336268 |
attaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatggaagta |
2336328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 602 - 735
Target Start/End: Original strand, 2323964 - 2324097
Alignment:
| Q |
602 |
agatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgtgttg |
701 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||| | ||||||| ||||||||||| || |||||| |||| |
|
|
| T |
2323964 |
agatggagttttatcatctgcttttatgggtggacttcttgtggcttctccaatatttgcatttctagctcagaggtaattaatgtaaccattcatgttc |
2324063 |
T |
|
| Q |
702 |
caatcagtttgaaacctattcatattattagata |
735 |
Q |
| |
|
|||||| |||||||||||| || |||| |||| |
|
|
| T |
2324064 |
caatcaaagtgaaacctattcttagtattcgata |
2324097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 2313554 - 2313615
Alignment:
| Q |
79 |
ggaacatgcactgaaggtgctgctgctacttgcacttctgctacaggaatacagtaagatat |
140 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
2313554 |
ggaacatgcactgaatatgctgctgctacttggacttctactacaggaatacagtaagatat |
2313615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 2313115 - 2313155
Alignment:
| Q |
16 |
attaatttgttaaactatatggatcgaggagcaatagctag |
56 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
2313115 |
attaatttgttaaactatttggatctaggagcaatagctag |
2313155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 577 - 660
Target Start/End: Complemental strand, 36799414 - 36799331
Alignment:
| Q |
577 |
gggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttg |
660 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| ||| | ||||||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
36799414 |
gggattttaacttgaccaattttcaagatggagttctttcatctgcttttatggttggacttcttatagcttctccaatatttg |
36799331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 789 - 884
Target Start/End: Complemental strand, 36798802 - 36798707
Alignment:
| Q |
789 |
tattttgcagtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
884 |
Q |
| |
|
||||||||||||| || || ||||||||||| ||| |||||||||| ||||||| | |||||||| | ||||||| ||||||| |||||||||| |
|
|
| T |
36798802 |
tattttgcagtgtaaacccctttagacttattggagttggattgtcagtttggactgttgcaaccttatgctgtggtctttctttcaatttctggt |
36798707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 36800253 - 36800204
Alignment:
| Q |
23 |
tgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga |
72 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36800253 |
tgttgaactatttggaccgaggagcaatagctagcaatggtgttaatgga |
36800204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 572 - 660
Target Start/End: Complemental strand, 12969710 - 12969622
Alignment:
| Q |
572 |
caggtgggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttg |
660 |
Q |
| |
|
|||| |||||||||| |||| |||||| ||||||||||||| ||||||| ||||||||||||||| | || ||||||||||| |||| |
|
|
| T |
12969710 |
caggggggattttaacttgagtaattttcaagatggtgttttgtcatctgcatttatggttggacttttaattgcttctccaatttttg |
12969622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 12969872 - 12969834
Alignment:
| Q |
35 |
tggatcgaggagcaatagctagcaatggtgttaatggaa |
73 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12969872 |
tggatcgaggagctatagctagcaatggtgttaatggaa |
12969834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University