View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_low_20 (Length: 403)

Name: NF18717_low_20
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_low_20
NF18717_low_20
[»] chr7 (1 HSPs)
chr7 (11-389)||(35889248-35889626)
[»] chr1 (2 HSPs)
chr1 (25-72)||(1251733-1251781)
chr1 (272-325)||(29555238-29555291)
[»] chr6 (1 HSPs)
chr6 (267-324)||(12414298-12414355)
[»] chr3 (2 HSPs)
chr3 (277-329)||(36280831-36280883)
chr3 (283-324)||(48352150-48352191)
[»] chr8 (1 HSPs)
chr8 (278-345)||(33178090-33178157)
[»] chr2 (1 HSPs)
chr2 (286-349)||(15456118-15456181)
[»] chr5 (1 HSPs)
chr5 (283-324)||(22113951-22113992)
[»] chr4 (1 HSPs)
chr4 (276-329)||(1072698-1072751)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 389
Target Start/End: Original strand, 35889248 - 35889626
Alignment:
Q  11 agaatatgtgttggtggtatttctctagattgtatggagcataaaaggactacattcacatctttcacgttttgnnnnnnntatgtcattctccgtatct 110  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||    
T  35889248 agaaaatgtgttggtggtatttctttagattgtatggagcataaaaggactacattcacatctttcacgttttgaaaaaaatatgtcattctccatatct 35889347  T
Q  111 aactgcaactcaaaatctatgaggaaggtgggggatggatttgactcttctctggatggatctttgggtggatggtgttactttacattctcgtttcaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35889348 aactgcaactcaaaatctatgaggaaggtgggggatggatttgactcttctctggatggatctttgggtggatggtgttactttacattcttgtttcaat 35889447  T
Q  211 aggctgtttgatttatctgaaaataactttgtcactgtttcagaaatgtttcatctagggagggatgtgaatggtgaggcgtggaagtggcgtcggaggt 310  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35889448 aggctgtttgatttatctgaaaataaatttgtcactgtttcagaaatgtttcatctagggagggatgtgaatggtgaggcgtggaagtggcgtcggaggt 35889547  T
Q  311 tatttgtttgggagaaagatcaggtgagggagtgtagtgcattggttttctctactattttgcagatggtgtggaggat 389  Q
    | |||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  35889548 tgtttgtttgggaggaagatcaggtgagggagtgtaaggcattggttttctctactattttgcggatggtgtggaggat 35889626  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 1251781 - 1251733
Alignment:
Q  25 tggtatttctcta-gattgtatggagcataaaaggactacattcacatc 72  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||    
T  1251781 tggtatttctctaagactgtatggagcataaaaggactacattcacatc 1251733  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 29555291 - 29555238
Alignment:
Q  272 gggatgtgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggaga 325  Q
    ||||||||||||| ||||| ||||||||| || ||||||||||||  |||||||    
T  29555291 gggatgtgaatggcgaggcttggaagtggtgtaggaggttatttgcgtgggaga 29555238  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 12414355 - 12414298
Alignment:
Q  267 agggagggatgtgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggag 324  Q
    |||| ||| ||| ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  12414355 agggtgggttgtcaatggtgaggcttggaagttgcgtcggaggttatttgtgtgggag 12414298  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 36280883 - 36280831
Alignment:
Q  277 gtgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggagaaaga 329  Q
    ||||| ||||||| ||||||||||||| |||||||||||| ||||||| ||||    
T  36280883 gtgaacggtgaggagtggaagtggcgtaggaggttatttgcttgggaggaaga 36280831  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 48352150 - 48352191
Alignment:
Q  283 ggtgaggcgtggaagtggcgtcggaggttatttgtttgggag 324  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  48352150 ggtgaggcgtggaagtggcggaggaggttatttgcttgggag 48352191  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 33178157 - 33178090
Alignment:
Q  278 tgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggagaaagatcaggtgagggagtgt 345  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||||| ||||   |||||||||||||    
T  33178157 tgaatggagaggcgtggaagtggcgtcagaggttgttcgcttgggaggaagagttggtgagggagtgt 33178090  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 15456118 - 15456181
Alignment:
Q  286 gaggcgtggaagtggcgtcggaggttatttgtttgggagaaagatcaggtgagggagtgtagtg 349  Q
    |||||||| |||| |||| ||| ||| || ||||||||| | ||||||||||||||||||||||    
T  15456118 gaggcgtgaaagttgcgtaggatgttgttggtttgggaggatgatcaggtgagggagtgtagtg 15456181  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 22113951 - 22113992
Alignment:
Q  283 ggtgaggcgtggaagtggcgtcggaggttatttgtttgggag 324  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  22113951 ggtgaagcgtggaagtggcgtaggaggttatttgtgtgggag 22113992  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 1072698 - 1072751
Alignment:
Q  276 tgtgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggagaaaga 329  Q
    |||||||||||||||||| ||||| ||| |||||||| | ||||||||| ||||    
T  1072698 tgtgaatggtgaggcgtgcaagtgtcgtaggaggttactcgtttgggaggaaga 1072751  T

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