View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_low_21 (Length: 388)

Name: NF18717_low_21
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_low_21
NF18717_low_21
[»] scaffold0140 (1 HSPs)
scaffold0140 (7-373)||(36079-36445)
[»] chr1 (3 HSPs)
chr1 (7-364)||(23573394-23573750)
chr1 (269-330)||(31815134-31815195)
chr1 (72-227)||(31814943-31815098)
[»] chr4 (3 HSPs)
chr4 (84-373)||(13507638-13507927)
chr4 (84-373)||(13507322-13507611)
chr4 (271-334)||(28427505-28427568)
[»] chr6 (3 HSPs)
chr6 (71-227)||(7799387-7799543)
chr6 (71-227)||(19398488-19398644)
chr6 (271-330)||(7799581-7799640)
[»] scaffold0129 (2 HSPs)
scaffold0129 (269-330)||(3621-3682)
scaffold0129 (71-227)||(3429-3585)
[»] chr2 (2 HSPs)
chr2 (269-330)||(22059527-22059588)
chr2 (72-227)||(22059336-22059491)
[»] chr3 (4 HSPs)
chr3 (271-330)||(5386219-5386278)
chr3 (269-359)||(51253101-51253190)
chr3 (270-329)||(5496660-5496719)
chr3 (198-233)||(51253217-51253252)


Alignment Details
Target: scaffold0140 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 36445 - 36079
Alignment:
Q  7 taacattgatttaacgtttgaactgagtcattacactacatcttcatatatgaaatgaacattgcccaagatacaaccaacagaaccataaacaaatttg 106  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  36445 taacattgatttaacatttgaaccgagtcattacactacatcttcatatatgaaatgaacattgcccaaaatacaaccaacataaccataaacaaatttg 36346  T
Q  107 cctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagtaatgtctttcaacatctcttcaca 206  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  36345 ccttctttcttgagtattggagcttcttctttaacttctcatttttgttgattccgaattccttcattattccagtaatgtctttcaacatctcttcaca 36246  T
Q  207 attgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatggaggatgtccatcaatttcatca 306  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36245 attgcaatcacatggaagttttgtgacattcgaaggtgatgcttaagctcttcttactactcctggacaaacatatggaggatgtccatcaatttcatca 36146  T
Q  307 tcccatatgaacaacttgcaactattaggatcctaaaaacaaaatcaaccatacacatcttttaatt 373  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36145 tcccatatgaacaacttgcaactattaggaccctaaaaacaaaatcaaccatacacatcttttaatt 36079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 23573750 - 23573394
Alignment:
Q  7 taacattgatttaacgtttgaactgagtcattacactacatcttcatatatgaaatgaacattgcccaagatacaaccaacagaaccataaacaaatttg 106  Q
    ||||||||||||||| ||||||| |||  || |||||||||| ||| ||||| |||||||||||||||||||||||||||   || ||||||||||||||    
T  23573750 taacattgatttaacatttgaaccgag--atcacactacatcgtcagatatgtaatgaacattgcccaagatacaaccaatgtaaacataaacaaatttg 23573653  T
Q  107 cctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagtaatgtctttcaacatctcttcaca 206  Q
    ||| ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||||| |||||||||||||| || |||||||||    
T  23573652 ccttctttcttgagtattggagtttcttctttaacttgtcatttttgttgattccgaattcgttgattattccagtaatgtctttcagcagctcttcaca 23573553  T
Q  207 attgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatggaggatgtccatcaatttcatca 306  Q
    ||||||||||||| |||| ||||| |||| ||| | |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  23573552 attgcaatcacatcgaagttttgttacatccgatgatgatgcttcagctcttcttactcctcctggacgaacatatgcaggatgtccatcaatttcatca 23573453  T
Q  307 tcccatatgaacaacttgcaactattaggatcct-aaaaacaaaatcaaccatacacat 364  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||| |||||| |||||    
T  23573452 tcccatatgaacaacttgcaactattagaaccctaaaaaacaaaataaaccatccacat 23573394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 31815134 - 31815195
Alignment:
Q  269 ctggacgaacatatggaggatgtccatcaatttcatcatcccatatgaacaacttgcaacta 330  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  31815134 ctggacgaacatatggaggatgtccttcaatttcatcatcccatatgtacaacttacaacta 31815195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 31814943 - 31815098
Alignment:
Q  72 ccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttc 171  Q
    |||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| ||  |||| |  || |||    
T  31814943 ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcgttcccagatctttc 31815042  T
Q  172 attattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt 227  Q
    |  ||   ||| |  ||||||| || | ||||||||||||||||||||||||||||    
T  31815043 aacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt 31815098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 84 - 373
Target Start/End: Original strand, 13507638 - 13507927
Alignment:
Q  84 caacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagta 183  Q
    ||||| || ||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||| |||||||| ||||  || ||||||||||||| ||||    
T  13507638 caacaaaatcataaacaaatttgccttcttccttgagtattggagcttcttctttagcttctcgtttttgtttattctgaaatccttcattattccagta 13507737  T
Q  184 atgtctttcaacatctcttcacaattgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatg 283  Q
    |||| ||||  |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  || ||||||||||||||     
T  13507738 atgtttttcggcatctcttcacaattgcaatcacatggaagctttgtgacagtcaaaggtgatgcttcaactcttcttaccgctactggacgaacatata 13507837  T
Q  284 gaggatgtccatcaatttcatcatcccatatgaacaacttgcaactattaggatcctaaaaacaaaatcaaccatacacatcttttaatt 373  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| | || ||||||||    
T  13507838 gaggatgtccatcaatttcatcatcccatatgaacaacttacaactattagcaccctaaaaacaaaatcaaccatatatatattttaatt 13507927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 84 - 373
Target Start/End: Complemental strand, 13507611 - 13507322
Alignment:
Q  84 caacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagta 183  Q
    ||||| |||||||||||||||||| | ||| ||||| |||| ||||||||||||||||||||| ||||||||||||   || ||||||||||||  ||||    
T  13507611 caacaaaaccataaacaaatttgcattcttccttgagtattagagcttcttctttaacttctcgtttttgttgattttgaaatccttcattatttgagta 13507512  T
Q  184 atgtctttcaacatctcttcacaattgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatg 283  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||| || |||||||  || || |||||||||| |    
T  13507511 atgtctttcagcatctcttcacaattgcaatcacgtggaagctttgtgaccgtcgaaggtgatgcttcagctattcttaccgctactagacgaacatacg 13507412  T
Q  284 gaggatgtccatcaatttcatcatcccatatgaacaacttgcaactattaggatcctaaaaacaaaatcaaccatacacatcttttaatt 373  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||| |||| ||||||||    
T  13507411 gaggatgtccatcaatttcatcatcccatatgaacaacttacaactattagcaccctaataacaaaatcaaccatatacattttttaatt 13507322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 28427568 - 28427505
Alignment:
Q  271 ggacgaacatatggaggatgtccatcaatttcatcatcccatatgaacaacttgcaactattag 334  Q
    ||||| |||||||| |||||||| |||||||||||||| |||||| ||||||| ||||||||||    
T  28427568 ggacggacatatgggggatgtccttcaatttcatcatcacatatgtacaacttacaactattag 28427505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 7799387 - 7799543
Alignment:
Q  71 cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt 170  Q
    ||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||||||||| |||||||| || || ||    
T  7799387 cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcatttttcttgattcccaaatcttt 7799486  T
Q  171 cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt 227  Q
    || |||   ||| |  ||||||| || | ||||||||||||||||||||||||||||    
T  7799487 caatatcacagtcaaatctttcatcaccacttcacaattgcaatcacatggaagctt 7799543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 19398488 - 19398644
Alignment:
Q  71 cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt 170  Q
    ||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| || ||||||||||| |||||||| || || ||    
T  19398488 cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaaattctcatttttcttgattcccaaatcttt 19398587  T
Q  171 cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt 227  Q
    || |||   ||| |  ||||||| || | ||||||||||||||||||||||||||||    
T  19398588 caatatcacagttaaatctttcatcaccacttcacaattgcaatcacatggaagctt 19398644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 7799581 - 7799640
Alignment:
Q  271 ggacgaacatatggaggatgtccatcaatttcatcatcccatatgaacaacttgcaacta 330  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||    
T  7799581 ggacgaacatatggagcatgtccttcaatttcatcatcccatatgtacaacttacaacta 7799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 3621 - 3682
Alignment:
Q  269 ctggacgaacatatggaggatgtccatcaatttcatcatcccatatgaacaacttgcaacta 330  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  3621 ctggacgaacatatggaggatgtccttcaatttcatcatcccatatgtacaacttacaacta 3682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 3429 - 3585
Alignment:
Q  71 cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt 170  Q
    ||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| |  || ||    
T  3429 cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcattcccagatcttt 3528  T
Q  171 cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt 227  Q
    ||  ||   ||| |  ||||||| || | ||||||||||||||||||||||||||||    
T  3529 caacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt 3585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 22059527 - 22059588
Alignment:
Q  269 ctggacgaacatatggaggatgtccatcaatttcatcatcccatatgaacaacttgcaacta 330  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  22059527 ctggacgaacatatggaggatgtccttcaatttcatcatcccatatgtacaacttacaacta 22059588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 22059336 - 22059491
Alignment:
Q  72 ccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttc 171  Q
    |||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| |  || |||    
T  22059336 ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcattcccagatctttc 22059435  T
Q  172 attattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt 227  Q
    |  ||   ||| |  ||||||| || | ||||||||||||||||||||||||||||    
T  22059436 aacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt 22059491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 5386278 - 5386219
Alignment:
Q  271 ggacgaacatatggaggatgtccatcaatttcatcatcccatatgaacaacttgcaacta 330  Q
    ||||||||||||||||||||||| ||||| |||||||||||| || ||||||| ||||||    
T  5386278 ggacgaacatatggaggatgtccttcaatatcatcatcccatttgtacaacttacaacta 5386219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 359
Target Start/End: Complemental strand, 51253190 - 51253101
Alignment:
Q  269 ctggacgaacatatggaggatgtccatcaatttcatcatcccatatgaacaacttgcaactattaggatcctaaaaacaaaatcaaccata 359  Q
    |||||||||  ||||||||||||   ||||||||||||||||||||||||| | |||||||||||  | ||| ||||||||||||| ||||    
T  51253190 ctggacgaatctatggaggatgtatttcaatttcatcatcccatatgaacatcctgcaactattaccaacct-aaaacaaaatcaatcata 51253101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 5496719 - 5496660
Alignment:
Q  270 tggacgaacatatggaggatgtccatcaatttcatcatcccatatgaacaacttgcaact 329  Q
    |||||||||||||| ||||||| ||||||||||||| | |||||||||||| || |||||    
T  5496719 tggacgaacatatgtaggatgttcatcaatttcatcgttccatatgaacaatttacaact 5496660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 51253252 - 51253217
Alignment:
Q  198 ctcttcacaattgcaatcacatggaagctttgtgac 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  51253252 ctcttcacaattgcaatcacatggaagctttgtgac 51253217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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