View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_22 (Length: 332)
Name: NF18717_low_22
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 27468674 - 27468380
Alignment:
| Q |
16 |
atagtgtctcctaagtcctaattatattctaaagaaatgaccattggatttggtccccctaaactcataaattgattccaattcaactagtacacgaact |
115 |
Q |
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| T |
27468674 |
atagtgtctcctaagtcctaactatattctaaagaaatgaccattggatttggtccccctaaactcataaattgattccaattcaactagtac--gaact |
27468577 |
T |
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| Q |
116 |
agtctaccttcccatgatgatatcatactgtacgtctatataaaatttctctcttttttgtatttatagttacgtcattatattttttatttagaacatt |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27468576 |
agtctaccttcccatgat---atcatactgtacgtctatataaaatttctctcttttttgtatttatagttacgtcattatattttttatttagaacatt |
27468480 |
T |
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| Q |
216 |
aaaaaatgggtgtaaagactagtataagttgtgtttgtttgtccaatgcaaagttatttatttagtttgatacaagtttacaagtatgacaatttattat |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27468479 |
aaaaaatgagtgtaaagactagtataagttgtgtttgtttgtccaatgcaaagttatttatttagtttgatacaagtttatgagtatgacaatttattat |
27468380 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 2501362 - 2501406
Alignment:
| Q |
271 |
atttatttagtttgatacaagtttacaagtatgacaatttattat |
315 |
Q |
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| T |
2501362 |
atttatttagtttgatacaagtttatgagtatgacatattattat |
2501406 |
T |
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