View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18717_low_23 (Length: 328)
Name: NF18717_low_23
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 38160424 - 38160722
Alignment:
| Q |
9 |
atcacagattgtgcttgtacaggaggaaggatttgagactaaccaaatagggtctgaagaaatggaactcaatatttctcttgttcttgagaagattgag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38160424 |
atcacagattgtgcttgtacaggaggaaggatttgagactaaccaaattgggtctgaggaaatggaactcaatgtttctcttgttcttgagaagattgag |
38160523 |
T |
|
| Q |
109 |
aattttactcagagggaagctttatatagttgttacacttacacactgtttgaagcttgaaatcatactctagatgaatgttaactcttttaaatgttta |
208 |
Q |
| |
|
|||||||||||||||| |||| |||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
38160524 |
aattttactcagagggtagctatataaagtt---acacctacacactgtttgaagcttgaaatcatactgtagatgaatgttaaatctttgaaatgttta |
38160620 |
T |
|
| Q |
209 |
attgttgattgtttgtaggtgactgagctcttagaatcagggaaaacaatgcttaaggagctttgcaatgaatttgaagagaaactgattatgtgagata |
308 |
Q |
| |
|
||||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || |
|
|
| T |
38160621 |
attgtggatttcttgtaggtatctgagctcttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgcgagtta |
38160720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 38116624 - 38116750
Alignment:
| Q |
13 |
cagattgtgcttgtacaggaggaaggatttgagactaaccaaatagggtctgaagaaatggaactcaatatttctcttgttcttgagaagattgagaatt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38116624 |
cagattgtacttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaatt |
38116723 |
T |
|
| Q |
113 |
ttactcagagggaagctttatatagtt |
139 |
Q |
| |
|
|||| ||||||| |||| |||| |||| |
|
|
| T |
38116724 |
ttacccagagggtagctatataaagtt |
38116750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 38116767 - 38116892
Alignment:
| Q |
180 |
agatgaatgttaactcttttaaatgtttaattgttgattgtttgtaggtgactgagctcttagaatcagggaaaacaatgcttaaggagctttgcaatga |
279 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
38116767 |
agatgaatgttaaatctttgaaatgtttaattgtggatttcatgtaggtatctgagctcttggaatcagggaaaacaatgtttaaggagctatgcaatga |
38116866 |
T |
|
| Q |
280 |
atttgaagagaaactgattatgtgag |
305 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38116867 |
atttgaagagaaactgattatgtgag |
38116892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 49004405 - 49004699
Alignment:
| Q |
13 |
cagattgtgcttgtacaggaggaaggatttgagactaaccaaatagggtctgaagaaatggaactcaatatttctcttgttcttgagaagattgagaatt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
49004405 |
cagattgtacttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctgaatatttctcttgttcttgagaagattgagaatt |
49004504 |
T |
|
| Q |
113 |
ttactcagagggaagctttatatagttgttacacttacacactgtttgaagcttgaaatcatactctagatgaatgttaactcttttaaatgtttaattg |
212 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
49004505 |
ttactcagagggtagctatataa---tgttacacttacacactgtttgaagcttgaaatcataagctagatgaatgttaaatctttgaaatgtttaattg |
49004601 |
T |
|
| Q |
213 |
ttgattgtttgtaggtgactgagctcttagaatcagggaaaacaatgcttaaggagctttgcaatgaatttgaagagaaactgattatgtgagatatg |
310 |
Q |
| |
|
| |||| |||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49004602 |
tggatttcttgtaggtatctgagcttttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgtgagttatg |
49004699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University