View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_24 (Length: 328)
Name: NF18717_low_24
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 35889325 - 35889626
Alignment:
| Q |
13 |
aaaatatgtcattctccgtatctaactgcaactcaaaatctatgaggaaggtgggggatggatttgactcttctctggatggatctttgggtggatggtg |
112 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35889325 |
aaaatatgtcattctccatatctaactgcaactcaaaatctatgaggaaggtgggggatggatttgactcttctctggatggatctttgggtggatggtg |
35889424 |
T |
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| Q |
113 |
ttactttacattctcgtttcaataggctgtttgatttatctgaaaataactttgtcactgtttcagaaatgtttcatctagggagggatgtgaatggtga |
212 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35889425 |
ttactttacattcttgtttcaataggctgtttgatttatctgaaaataaatttgtcactgtttcagaaatgtttcatctagggagggatgtgaatggtga |
35889524 |
T |
|
| Q |
213 |
ggcgtggaagtggcgtcggaggttatttgtttgggagaaagatcaggtgagggagtgtagtgcattggttttctctactattttgcagatggtgtggagg |
312 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
35889525 |
ggcgtggaagtggcgtcggaggttgtttgtttgggaggaagatcaggtgagggagtgtaaggcattggttttctctactattttgcggatggtgtggagg |
35889624 |
T |
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| Q |
313 |
at |
314 |
Q |
| |
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|| |
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| T |
35889625 |
at |
35889626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 12414355 - 12414298
Alignment:
| Q |
192 |
agggagggatgtgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggag |
249 |
Q |
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| T |
12414355 |
agggtgggttgtcaatggtgaggcttggaagttgcgtcggaggttatttgtgtgggag |
12414298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 36280883 - 36280831
Alignment:
| Q |
202 |
gtgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggagaaaga |
254 |
Q |
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||||| ||||||| ||||||||||||| |||||||||||| ||||||| |||| |
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| T |
36280883 |
gtgaacggtgaggagtggaagtggcgtaggaggttatttgcttgggaggaaga |
36280831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 48352150 - 48352191
Alignment:
| Q |
208 |
ggtgaggcgtggaagtggcgtcggaggttatttgtttgggag |
249 |
Q |
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| T |
48352150 |
ggtgaggcgtggaagtggcggaggaggttatttgcttgggag |
48352191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 33178157 - 33178090
Alignment:
| Q |
203 |
tgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggagaaagatcaggtgagggagtgt |
270 |
Q |
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||||||| ||||||||||||||||||| |||||| || | ||||||| |||| ||||||||||||| |
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| T |
33178157 |
tgaatggagaggcgtggaagtggcgtcagaggttgttcgcttgggaggaagagttggtgagggagtgt |
33178090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 15456118 - 15456181
Alignment:
| Q |
211 |
gaggcgtggaagtggcgtcggaggttatttgtttgggagaaagatcaggtgagggagtgtagtg |
274 |
Q |
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|||||||| |||| |||| ||| ||| || ||||||||| | |||||||||||||||||||||| |
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| T |
15456118 |
gaggcgtgaaagttgcgtaggatgttgttggtttgggaggatgatcaggtgagggagtgtagtg |
15456181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 22113951 - 22113992
Alignment:
| Q |
208 |
ggtgaggcgtggaagtggcgtcggaggttatttgtttgggag |
249 |
Q |
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||||| ||||||||||||||| ||||||||||||| |||||| |
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| T |
22113951 |
ggtgaagcgtggaagtggcgtaggaggttatttgtgtgggag |
22113992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 1072698 - 1072751
Alignment:
| Q |
201 |
tgtgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggagaaaga |
254 |
Q |
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|||||||||||||||||| ||||| ||| |||||||| | ||||||||| |||| |
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| T |
1072698 |
tgtgaatggtgaggcgtgcaagtgtcgtaggaggttactcgtttgggaggaaga |
1072751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 29555291 - 29555238
Alignment:
| Q |
197 |
gggatgtgaatggtgaggcgtggaagtggcgtcggaggttatttgtttgggaga |
250 |
Q |
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||||||||||||| ||||| ||||||||| || |||||||||||| ||||||| |
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| T |
29555291 |
gggatgtgaatggcgaggcttggaagtggtgtaggaggttatttgcgtgggaga |
29555238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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