View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_25 (Length: 320)
Name: NF18717_low_25
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 46096252 - 46096536
Alignment:
| Q |
1 |
atggtggccagccttcttcaataacta----ttcaatttcccgagtaaagac--tgtacagtggacacaagtcatttgtagttacttccacatttgactt |
94 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46096252 |
atggtggccagccttcttcaataactagttattcaatttcccgagtaaagacagtgtatagtggacacaagtcatttgtagttacttccacatttgactt |
46096351 |
T |
|
| Q |
95 |
ttacaatttgcatcaagtttcccgttcttgtttcatctaaaaaggtagtggggtctctctaagtcgagggtatgaaaatagcattgtgcactaacgattt |
194 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46096352 |
ttacaatttgcatcaagtttcccgttcttgtttcatctaaaaaggtagtggggtctctctaagtcgagggtatgaaaatagcattgtgcactaaccattt |
46096451 |
T |
|
| Q |
195 |
taagatgtctcccagcttactttctcattctataaagagaaagtgggtatgtgtcgagtaatgtatggttgcaatctttcatatt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
46096452 |
taagatgtctcccagcttactttctcattctataaagagaaagtgagtatgtgtcgagtaatgtatggttgcaacctttcatatt |
46096536 |
T |
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