View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18717_low_28 (Length: 298)
Name: NF18717_low_28
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 34888890 - 34889062
Alignment:
| Q |
1 |
aacatcgcagtctcataaatatgttgagataacggataatatcaaggaggatatgtctagagactagattgtttcgttagtgtggactcacaaagaaagc |
100 |
Q |
| |
|
|||||| || |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
34888890 |
aacatctcaatctcataaatatgttgagataaaagatagtatcaaggaggttatgtctagagactggattgttttctcagtgtggactcacaaagaaagc |
34888989 |
T |
|
| Q |
101 |
aaccaatgtgcggacattttggcgaaatggcaagcataccaatgtacggattatatggcgaaaatgggaggaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34888990 |
aaccaatgtgcggacattttggcgaaatggcaagcataccaatgtacggattatatggcgaaaatgggaggaa |
34889062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 34034738 - 34035023
Alignment:
| Q |
1 |
aacatcgcagtctcataaatatgttgagataacggataatatcaaggaggatatgtctagagactagattgtttcgttagtgtggactcacaaagaaagc |
100 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| ||||| | |||||||||| | |||||||||| | |||||||| |||| |||||| | | ||||||| |
|
|
| T |
34034738 |
aacatctcagcctcataaatatgttgagattacggagagtatcaaggagcttgtgtctagagattggattgttttgttaaattggactgaaagagaaagc |
34034837 |
T |
|
| Q |
101 |
aaccaatgtgcggacattttggcgaaa-tgg---caagcat--accaatgtacggattatatggcgaaaatgggaggaatcaccgagaatagttttacaa |
194 |
Q |
| |
|
|||||||||||||| || |||||||| ||| ||| || |||||| | |||||| |||||| ||||||||| ||| |||| | |||| | |||| |
|
|
| T |
34034838 |
aaccaatgtgcggattttatggcgaaaatgggagcaaaaatcgaccaatatgcggattttatggcagaaatgggagcaattaccgtgggtagtgtaacaa |
34034937 |
T |
|
| Q |
195 |
tattattttcaaagccaccaccttgcttatcttctttactttcgagtgatgccaagagaactacatatgtaagagcgtaatttatagtt |
283 |
Q |
| |
|
| || | ||||||||| ||||| |||||||||||||||||| ||||||||||||||| | |||||| | ||||| |||||||||||| |
|
|
| T |
34034938 |
tgtt---tccaaagccactaccttacttatcttctttactttctagtgatgccaagagagcaacatatattagagcataatttatagtt |
34035023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University