View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_29 (Length: 289)
Name: NF18717_low_29
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 38 - 270
Target Start/End: Original strand, 28546549 - 28546781
Alignment:
| Q |
38 |
tccttaatccttagagtctgaatatactagtaaatgggggttcacaagcaagcagtcttacaatcgtaagaaagcacaaatacgccgtagtgaccaaaac |
137 |
Q |
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| T |
28546549 |
tccttaatccttaaagtctgaatatactagtaaatgggggttcacaagcaagcagtcttacaatcgtaagaaagcacaaatacgccgtagtgaccaaaac |
28546648 |
T |
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| Q |
138 |
tttctcatttctcactaagttgaccctttggcattattacctataatggatttccatcatagtgatatagattatagtatacaagatttggttttgtgtg |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28546649 |
tttctcatttctcactaagttgaccctttggcattattacctataatggatttccatcatagtgatatagattatagtatacaagatttggttttgtgtg |
28546748 |
T |
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| Q |
238 |
tgtgagtatgttcatattgtgatttgtggttgg |
270 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28546749 |
tgtgagtatgttcatattgtgatttgtggttgg |
28546781 |
T |
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