View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_34 (Length: 237)
Name: NF18717_low_34
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_34 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25674 - 25894
Alignment:
| Q |
1 |
cttaaatttacctatcaagatgttcaattctatcatgaaattgatcgtagagcactctttagaataagaccattgcatctatctgagaatggtgatactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25674 |
cttaaatttacctatcaagatgttcaattctatcatgaaattgatcgtagcgcactttttagaataagaccattgcatctatctgagaatggtgatactt |
25773 |
T |
|
| Q |
101 |
tggttttggcaaacaaccaaaatgaccgagcaattctctacaaccggagaacaaacaaagcaaggaaaactagaatgaacaataacatatcttggttatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25774 |
tggttttggcaaacaaccaaaatgaccgagcaattctctacaaccggagaacgaataaagcaaggaaaactagaatgtacaataacatatcttggttatc |
25873 |
T |
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| Q |
201 |
catccacgattatgtcgaaag |
221 |
Q |
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|||||| |||||||||||||| |
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| T |
25874 |
catccatgattatgtcgaaag |
25894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 8630 - 8845
Alignment:
| Q |
6 |
atttacctatcaagatgttcaattctatcatgaaattgatcgtagagcactctttagaataagaccattgcatctatctgagaatggtgatactttggtt |
105 |
Q |
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| T |
8630 |
atttagctatcacgatgttcaattgtatcatgaaattggtcctagcacacttttcagaataagaccattgcatctatctgagaatggtgatactttggtt |
8729 |
T |
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| Q |
106 |
ttggcaaacaaccaaaatgaccgagcaattctctacaaccggagaacaaacaaagcaaggaaaactagaatgaacaataacatatcttggttatccatcc |
205 |
Q |
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| T |
8730 |
ttggcaaacaaccaaaatgaccgagcaattctctacaaccggagaacgaacaaagcaaggaaaactataatgttcaataacatatcttggttatccatcc |
8829 |
T |
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| Q |
206 |
acgattatgtcgaaag |
221 |
Q |
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| T |
8830 |
acgattatgtcgaaag |
8845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 22473160 - 22472953
Alignment:
| Q |
13 |
tatcaagatgttcaattctatcatgaaattgatcgtagagcactctttagaataagaccattgcatctatctgagaatggtgatactttggttttggcaa |
112 |
Q |
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||||| ||||||||||| ||||||||||||| || ||| ||| | | |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
22473160 |
tatcaggatgttcaattgtatcatgaaattggtcatagcgcaatttatagaataagaccattgcatctatctgagaacggtgatactttggtgttggcaa |
22473061 |
T |
|
| Q |
113 |
acaaccaaaatgaccgagcaattctctacaaccggagaacaaacaaagcaaggaaaactagaatgaacaataacatatcttggttatccatccacgatta |
212 |
Q |
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| T |
22473060 |
acaaccaaaataaccgagcaattctctacaatcggtgaactaacaaagcaaggaaaacaagaatgtacaataacatatcttggttatccatccaagatta |
22472961 |
T |
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| Q |
213 |
tgtcgaaa |
220 |
Q |
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|||||||| |
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| T |
22472960 |
tgtcgaaa |
22472953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 22525187 - 22525004
Alignment:
| Q |
1 |
cttaaatttacctatcaagatgttcaattctatcatgaaattgatcgtagagcactctttagaataagaccattgcatctatctgagaatggtgatactt |
100 |
Q |
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|||||||||| ||||||| || ||||| | |||||||||||| | |||| |||| || | | |||||||||| ||||| ||||||||||| ||||| |
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| T |
22525187 |
cttaaatttagctatcaaaatattcaaatgaatcatgaaattggtagtagctcacttttaatattaagaccattacatctttctgagaatggggatacga |
22525088 |
T |
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| Q |
101 |
tggttttggcaaacaaccaaaatgaccgagcaattctctacaaccg--gagaacaaacaaagcaaggaaaactagaatgaacaa |
182 |
Q |
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| T |
22525087 |
tagtattgaaaagcaaccaagaagatcgagcaattctctataaccggagagaactagcaaagcaaagaaaactagaattaacaa |
22525004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 22534745 - 22534861
Alignment:
| Q |
65 |
taagaccattgcatctatctgagaatggtgatactttggttttggcaaacaaccaaaatgaccgagcaattctctacaaccggagaacaaacaaagcaag |
164 |
Q |
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|||||||||||||||| ||||||||||| ||||| | || ||| || ||||||| | || ||||||||||| || ||||||| ||| |||||||||| |
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| T |
22534745 |
taagaccattgcatctttctgagaatggggatacgctagtattgaaaagcaaccaagaagatcgagcaattctttataaccggataactaacaaagcaaa |
22534844 |
T |
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| Q |
165 |
gaaaactagaatgaaca |
181 |
Q |
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| T |
22534845 |
gaaaactagaattaaca |
22534861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 2911194 - 2911300
Alignment:
| Q |
70 |
ccattgcatctatctgagaatggtgatactttggttttggcaaacaaccaaaatgaccgagcaattctctacaaccggagaacaaacaaagcaaggaaaa |
169 |
Q |
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||||||||||| ||||||| || |||||| |||| ||||||||||||| | | ||| | ||||||||||| ||||||||||| |||| ||||| ||||| |
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| T |
2911194 |
ccattgcatctttctgagagtgatgatacagtggtgttggcaaacaacctacaagactgtgcaattctctataaccggagaactaacagagcaaagaaaa |
2911293 |
T |
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| Q |
170 |
ctagaat |
176 |
Q |
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||||||| |
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| T |
2911294 |
ctagaat |
2911300 |
T |
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