View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_37 (Length: 214)
Name: NF18717_low_37
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_37 |
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| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: scaffold0129 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 17291 - 17469
Alignment:
| Q |
18 |
atacagaatcaaaactatcattcatatacaagggcaagggtgttgtacaatacacctcatcgcttaagtcaaatgacaccaaatatcccttatgctcaaa |
117 |
Q |
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| T |
17291 |
atacagaatcaaagctatcattcatatacaaaggcaggggtgttgtacaaaacacctcattgcttatgtcaaatgacaccagatatcctttatgttcaaa |
17390 |
T |
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| Q |
118 |
ttcatcttgataccaatgacatactccattcatgtacacatagacacctacccaaccgtgatgagcacgaggcagatcc |
196 |
Q |
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| T |
17391 |
ttcatcttgataccagtgacacactcccttcatgtacacatagacacctacccaaccgtgatgagcacgaggaagatcc |
17469 |
T |
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Target: scaffold0129; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 33687 - 33865
Alignment:
| Q |
18 |
atacagaatcaaaactatcattcatatacaagggcaagggtgttgtacaatacacctcatcgcttaagtcaaatgacaccaaatatcccttatgctcaaa |
117 |
Q |
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||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||| ||||| |||||||||||||| |||||| ||||| ||||| |
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| T |
33687 |
atacagaatcaaagctatcattcatatacaaaggcaggggtgttgtacaaaacacctcattgcttatgtcaaatgacaccagatatcctttatgttcaaa |
33786 |
T |
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| Q |
118 |
ttcatcttgataccaatgacatactccattcatgtacacatagacacctacccaaccgtgatgagcacgaggcagatcc |
196 |
Q |
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||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33787 |
ttcatcttgataccagtgacacactcccttcatgtacacatagacacctacccaaccgtgatgagcacgaggaagatcc |
33865 |
T |
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