View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_low_39 (Length: 204)

Name: NF18717_low_39
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_low_39
NF18717_low_39
[»] chr6 (10 HSPs)
chr6 (24-204)||(5999277-5999457)
chr6 (24-173)||(8576516-8576674)
chr6 (24-173)||(35167916-35168074)
chr6 (24-173)||(28581914-28582074)
chr6 (24-173)||(34435003-34435161)
chr6 (43-173)||(32292619-32292743)
chr6 (85-173)||(10788336-10788426)
chr6 (24-173)||(7622130-7622288)
chr6 (85-173)||(642331-642419)
chr6 (96-173)||(10409219-10409296)
[»] chr1 (15 HSPs)
chr1 (24-173)||(48379294-48379452)
chr1 (24-173)||(31585434-31585592)
chr1 (24-173)||(47140554-47140712)
chr1 (24-173)||(29678522-29678680)
chr1 (24-173)||(17562987-17563145)
chr1 (24-173)||(38264525-38264683)
chr1 (85-173)||(25294198-25294286)
chr1 (24-164)||(36728955-36729104)
chr1 (24-175)||(31292958-31293118)
chr1 (24-173)||(19884610-19884768)
chr1 (36-170)||(2192002-2192145)
chr1 (85-164)||(25987165-25987244)
chr1 (132-173)||(15378698-15378739)
chr1 (24-73)||(15378770-15378819)
chr1 (120-173)||(17145512-17145565)
[»] chr3 (11 HSPs)
chr3 (24-173)||(13825674-13825832)
chr3 (24-173)||(25874911-25875069)
chr3 (24-173)||(4127766-4127925)
chr3 (85-173)||(12148798-12148886)
chr3 (85-173)||(21287881-21287969)
chr3 (115-173)||(5294986-5295044)
chr3 (24-173)||(27926827-27926985)
chr3 (24-173)||(48251851-48252009)
chr3 (85-173)||(36584162-36584250)
chr3 (24-62)||(21287983-21288021)
chr3 (24-71)||(26187804-26187851)
[»] chr2 (11 HSPs)
chr2 (24-173)||(13626501-13626659)
chr2 (24-173)||(5938501-5938659)
chr2 (24-143)||(5704399-5704527)
chr2 (24-173)||(5109974-5110131)
chr2 (27-173)||(42625222-42625376)
chr2 (85-173)||(13807338-13807426)
chr2 (24-150)||(31576151-31576286)
chr2 (115-173)||(45151526-45151584)
chr2 (85-173)||(31604598-31604686)
chr2 (24-84)||(45458588-45458648)
chr2 (24-62)||(45151442-45151480)
[»] chr4 (15 HSPs)
chr4 (24-173)||(41039099-41039257)
chr4 (24-173)||(23626621-23626779)
chr4 (24-173)||(38951387-38951545)
chr4 (85-173)||(8819575-8819663)
chr4 (24-173)||(51356948-51357105)
chr4 (24-168)||(19841513-19841666)
chr4 (27-173)||(42555097-42555243)
chr4 (85-173)||(40572168-40572254)
chr4 (97-173)||(22278076-22278152)
chr4 (101-173)||(40715136-40715208)
chr4 (94-165)||(36465096-36465167)
chr4 (113-173)||(24916616-24916676)
chr4 (118-172)||(55710059-55710113)
chr4 (64-128)||(29116861-29116926)
chr4 (24-84)||(17120487-17120547)
[»] chr8 (9 HSPs)
chr8 (24-173)||(7987430-7987588)
chr8 (24-173)||(36583093-36583251)
chr8 (24-167)||(7968638-7968790)
chr8 (85-173)||(8227502-8227590)
chr8 (86-173)||(11481199-11481286)
chr8 (24-173)||(31005782-31005940)
chr8 (85-155)||(9765276-9765346)
chr8 (97-173)||(6870773-6870849)
chr8 (24-153)||(13355588-13355726)
[»] chr5 (11 HSPs)
chr5 (24-175)||(42836746-42836906)
chr5 (27-173)||(40056749-40056904)
chr5 (24-173)||(23429000-23429158)
chr5 (24-173)||(35188800-35188958)
chr5 (85-173)||(39207372-39207460)
chr5 (85-173)||(3925977-3926065)
chr5 (27-173)||(39800611-39800766)
chr5 (26-173)||(33742926-33743074)
chr5 (24-73)||(2209414-2209463)
chr5 (24-157)||(42879092-42879234)
chr5 (115-163)||(26621249-26621297)
[»] scaffold0115 (1 HSPs)
scaffold0115 (27-173)||(21830-21985)
[»] scaffold0155 (1 HSPs)
scaffold0155 (24-173)||(7096-7238)
[»] chr7 (14 HSPs)
chr7 (24-173)||(7766826-7766984)
chr7 (24-173)||(23809882-23810040)
chr7 (36-169)||(30541697-30541839)
chr7 (24-175)||(38440651-38440805)
chr7 (85-173)||(5972746-5972834)
chr7 (24-173)||(25501909-25502067)
chr7 (24-173)||(11039392-11039549)
chr7 (25-173)||(33189159-33189316)
chr7 (27-170)||(27336711-27336863)
chr7 (24-84)||(2944273-2944333)
chr7 (24-173)||(22519395-22519553)
chr7 (115-171)||(1053384-1053440)
chr7 (24-62)||(5972848-5972886)
chr7 (24-72)||(36298654-36298702)
[»] scaffold0691 (1 HSPs)
scaffold0691 (85-173)||(7683-7771)
[»] scaffold0057 (1 HSPs)
scaffold0057 (32-170)||(66366-66513)
[»] scaffold0246 (1 HSPs)
scaffold0246 (85-132)||(10793-10840)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 5999457 - 5999277
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccgatatccgcgcggatatggatagagtacgaatttcatat 123  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  5999457 ataaatgttatccatggatatctgtataaacccgcagatacctcaaaatccgcggattactgatatccgcgcggatatggatagggtacggatttcatat 5999358  T
Q  124 ttatctaacggagcggacacgaatatcacactatccgcatccatggatattcctacacataggcacatcaattcatatgat 204  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5999357 ttatctaacggagcggacacggatatcacactatccgcatccatggatattcctacacataggcacaccaattcatatgat 5999277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 8576674 - 8576516
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||          |||||||||||||||||||||||||||||     
T  8576674 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatcggcggattactcgctaaatggatatccgcgcggatatggatagagtacgg 8576575  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||    
T  8576574 atttcatatttatttaacggaacggacacggatatcacactatccgcatccatggatat 8576516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 35167916 - 35168074
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||         ||||||||| |||||||| |||| |||||     
T  35167916 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccacggattacccgcgaaacggatatccgcacggatatgaatagggtacgg 35168015  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| |||||||||||| |||| ||| ||| |||||| ||||| |||||||||||||||    
T  35168016 attttatatttatctaatggagtggatacggatatcatactattcgcatccatggatat 35168074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 28582074 - 28581914
Alignment:
Q  24 ataaatgttatccatggatatctgtgta--aacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtac 112  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||| |||| || ||||||||         |||||||||||||||||| |||| |||     
T  28582074 ataaatgttatccatggatatctgtatataaacccgcggatacctctaaatatgtggattacccgctaaacggatatccgcgcggatatgaatagggtat 28581975  T
Q  113 gaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    | ||||||||||||||||||||||| |||| | |||||||||||||| |||||||||||||    
T  28581974 ggatttcatatttatctaacggagcagacatggatatcacactatccacatccatggatat 28581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 34435003 - 34435161
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||  || ||||||         |||| |||| ||||||| ||||| |||       
T  34435003 ataaatgttatccatggatatctgtataaaccaacggatacctcaaaatccacgaattacccgctaaacggatacccgcacggatatagatagggtagag 34435102  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||    
T  34435103 atttcatatttatctaatggagcggatacggatatcacactatccgcatccatgaatat 34435161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 32292619 - 32292743
Alignment:
Q  43 atctgtgtaaacccgcggatacctcaaaatctgcggattaccgatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggaca 142  Q
    |||||| ||||| |||||||| ||||||||| | ||||||      ||||| ||||||||||||| ||| | |||||||||||||| |||||||||||||    
T  32292619 atctgtataaacacgcggatatctcaaaatccgtggatta------tccgcacggatatggatagggtatggatttcatatttatccaacggagcggaca 32292712  T
Q  143 cgaatatcacactatccgcatccatggatat 173  Q
    || |||||| ||||||||||||||| |||||    
T  32292713 cggatatcatactatccgcatccatcgatat 32292743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 10788426 - 10788336
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcgg--acacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||  ||||| |||||||||||||||||| |||| ||||    
T  10788426 gatatccgcgcggatatggatagggtatggatttcatgtttatctaacggagcggacacacggatatcacactatccgcatacatgaatat 10788336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 7622288 - 7622130
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||||||  ||||||| |         ||||||| ||||||||||||||  ||||      
T  7622288 ataaatgttatccatgaatatctgtataaacccgcggataactcaaaatccacggattatccgctaaatggatatccacgcggatatggataaggtacag 7622189  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||  |||||| |||||||  ||||||||||||| |||||  |||||||    
T  7622188 atttcatatttattcaacggaacggacacagatatcacactatctgcatctgtggatat 7622130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 642331 - 642419
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| ||||||| ||||||||||| ||||||||||| | ||||||| ||||   | |||| ||||||||||||||| |||||||    
T  642331 gatatccgcacggatattgatagagtacggatttcatatttttttaacggaacggatgaggatattacactatccgcatccttggatat 642419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 10409219 - 10409296
Alignment:
Q  96 ggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||| ||||| |||| ||||||||| ||||||||| ||||  |||||||||||||  |||||||| ||||    
T  10409219 ggatatggatagggtacggattttatatttatccaacggagcgaacacatatatcacactatcatcatccatgaatat 10409296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 48379294 - 48379452
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||         ||||||||| ||||||||||||  |||||     
T  48379294 ataaatgttatccatggatatctgtataaacccgcggatacctaaaaatccgcggattacctgctaaattgatatccgcacggatatggatatggtacgg 48379393  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  48379394 atttcatatttatctaacggagcggacacggatttcacactatccgcatccatggatat 48379452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 31585434 - 31585592
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||         ||||||||||  ||||||||||| |||||     
T  31585434 ataaatgttatccatgaatatctgtataaacccgcggatacttcaaaatctgcggattacccgctaaacggatatccgcgttgatatggatagggtacgg 31585533  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| ||||||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  31585534 attttatatttatctaacggagcggacaaggatattacactatccgcatccatggatat 31585592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 47140712 - 47140554
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccg---------atatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||          |||||||||||||||| ||||   || |     
T  47140712 ataaatgttatccatggatatctgtacaaacccgcggatacctcaaaatccgcggattacccgctaaacgaatatccgcgcggatatagataagatatgg 47140613  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47140612 atttcatatttatccaacggagcggacacgaatatcacactatccgcatccatggatat 47140554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 29678522 - 29678680
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||         ||||||||||||||||||||||| ||| |     
T  29678522 ataaatgttatccatggatatctgtataaacccgtggatacctcaaaatccgcggattacccattaaacggatatccgcgcggatatggatagggtatgg 29678621  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| ||||||||||||||  |||||| |||||| ||||| ||||||||    
T  29678622 atttcatatttatccaacggagcggacacatatatcatactatctgcatcaatggatat 29678680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 17562987 - 17563145
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||         ||| ||||||  ||||||||||| ||| |     
T  17562987 ataaatgttatccatgaatatctgtataaacccgcggatacttcaaaatctgcggattacccgctaaacggatgtccgcgttgatatggatagggtatgg 17563086  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| ||||||||||||| |||||||||   |||| |||||||||||||||||||||||    
T  17563087 attttatatttatctaacagagcggacaaagatattacactatccgcatccatggatat 17563145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 38264525 - 38264683
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccg---------atatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||  | |||||||||         ||||| |||||||||||||||| | |||     
T  38264525 ataaatgttatccatggatatctgtataaacccgcggatacttcaaaattcgtggattaccggctaaacggatatctgcgcggatatggatagggcacgg 38264624  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||| ||||||||| |||||||  |||||||| |||||| ||||||| ||||    
T  38264625 atttcatatttgtctaacggaacggacacatatatcacagtatccgtatccatgaatat 38264683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 25294198 - 25294286
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||| ||||  |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  25294198 gatatccgcatggatatggatagggtacagatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 25294286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 36728955 - 36729104
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||| ||| | |||| |||||||  |||||||| ||||| ||||         ||||||||| ||||||| ||||| ||||||    
T  36728955 ataaatgttatccatgaatatttgtatgaacctgcggatatgtcaaaatccgcggactacccgctaaacggatatccgcacggatattgatagggtacga 36729054  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatc 164  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  36729055 atttcatatttatccaacggatcggacacggatatcacactatccgcatc 36729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 31292958 - 31293118
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||||   |||||| |         ||||||||| | |||||||||||  | ||     
T  31292958 ataaatgttatccatggatatctgtataaatccgcggatacctaaaaatccatggattatccgctaaatggatatccgcacagatatggataggctgcgg 31293057  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatattc 175  Q
    |||||||||||||||||||||||||| |  ||||||||| ||||||||||||| |||||||    
T  31293058 atttcatatttatctaacggagcggatataaatatcacattatccgcatccatagatattc 31293118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 19884610 - 19884768
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccg---------atatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||  | ||||| ||          |||| || |||||||| ||||| | | ||    
T  19884610 ataaatgttatccatggatatctatataaacccgcggatacctcaaaattcgtggattccccgttaaatgaatattcgtgcggatatagatagggcatga 19884709  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||| || ||||||||||||||  ||||||||||||||||||||||| ||||    
T  19884710 atttcatatttgtccaacggagcggacacagatatcacactatccgcatccatgaatat 19884768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 2192002 - 2192145
Alignment:
Q  36 catggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatttcatattta 126  Q
    ||||||||||||| ||||| ||| |||||||||||||||| |||||| |         ||| | |||||||||||||||||   |   |||||||||||     
T  2192002 catggatatctgtataaactcgcagatacctcaaaatctgtggattatctgctaaatggatgttcgcgcggatatggataggacatagatttcatatttg 2192101  T
Q  127 tctaacggagcggacacgaatatcacactatccgcatccatgga 170  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||    
T  2192102 tctaatggagcggacacggatatcacattatccgcatccatgga 2192145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 25987244 - 25987165
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatc 164  Q
    |||||| | |||||||||||||   |||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  25987244 gatatctgtgcggatatggataagatacatatttcatacttatctaacggagcggacacgtatatcacactatccacatc 25987165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 15378739 - 15378698
Alignment:
Q  132 cggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||| |||||| ||||||||||||||||||||| ||||||    
T  15378739 cggagcagacacggatatcacactatccgcatccacggatat 15378698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 15378819 - 15378770
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatc 73  Q
    ||||||||||||||||||||| ||| |||| |||  ||||||||||||||    
T  15378819 ataaatgttatccatggatatttgtataaatccgttgatacctcaaaatc 15378770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 17145512 - 17145565
Alignment:
Q  120 atatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||||| |||  ||||| |||||||| | ||||||||||    
T  17145512 atatttatctaacggagcggagacgggtatcatactatccgtacccatggatat 17145565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 13825832 - 13825674
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||| || |||| ||||||||| || |||||||         ||||||||||||||||||||||| |||||     
T  13825832 ataaatgttatccatggatatctgtataaacctgcagatatctcaaaatccgcagattacccgctaaatggatatccgcgcggatatggatagggtacgg 13825733  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13825732 atttcatatttatctaacggagcggacacatatatcacactatccgcatccatggatat 13825674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 25874911 - 25875069
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||         |||||  |||||||||||||||| |||||     
T  25874911 ataaacgttatccatggatatctgtataaacccacggatacctcaaaatccgcggattacccgctaaacggatatttgcgcggatatggatagggtacgg 25875010  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  25875011 atttcatctttatctaacggagcggacacggatatcacactatccacatccatgtatat 25875069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 4127925 - 4127766
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc----------gatatccgcgcggatatggatagagtacg 113  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||          |||||  ||| | |||||||||| || ||    
T  4127925 ataaatgttatccatggatatatgtataaacccgcggatacctcaaaatctgtggattaccccctaaatttgatatatgcgtgaatatggatagggttcg 4127826  T
Q  114 aatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
     |||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  4127825 gatttcatatttatccaacggaacggacacggatatcacactatccgcatccatggatat 4127766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 12148886 - 12148798
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  12148886 gatatccgcatggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 12148798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 21287969 - 21287881
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||| || || |||||||||| ||||| |||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||    
T  21287969 gatatctgcacgaatatggatagggtacggatttcatatttatctaacggaggggacacagatatcacactatctgcatccatggatat 21287881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 5295044 - 5294986
Alignment:
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  5295044 atttcatatttatctaacggaggggacacggatatcacactatccgcatccatgaatat 5294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 27926827 - 27926985
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||| ||||||||| ||||| ||||| || ||||||||||  | ||||||         |||| ||| |  ||||| ||||||||||      
T  27926827 ataaatgttatccatcgatatctgtataaactcgcgggtagctcaaaatctatgcattacccgttaaacggataaccgtgtcgatatagatagagtacat 27926926  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||| |||| ||||||||  |||||||| ||||    
T  27926927 atttcatatttatctaacggagcggacacggatatgacactatctacatccatgaatat 27926985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 48251851 - 48252009
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||| ||||||||| ||| |||||| |  |||||||||||||  | ||||||||         ||||||| || |||||| ||||| ||||||    
T  48251851 ataaatgttattcatggatatatgtataaaccagtagatacctcaaaattcgtggattacctgctaaacggatatccacgtggatatcgatagggtacga 48251950  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| |||||| |||| | | |||||||||||||| ||| |||||||||    
T  48251951 atttcatatttatccaacggaacggatatggatatcacactatccacattcatggatat 48252009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 36584250 - 36584162
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||| |||||| | |||||||||||||||| || ||||| || ||  |||||| |||||| ||||||||||||||    
T  36584250 gatatccgcgcggatatgaatagagcatgaatttcatatttatccaatggagcagatacagatatcatactatctgcatccatggatat 36584162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 21288021 - 21287983
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggat 62  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  21288021 ataaatgttatccatggatatctgtataaacccgcggat 21287983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26187851 - 26187804
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaa 71  Q
    |||||| ||||||||| |||||||| ||||| ||||||||||||||||    
T  26187851 ataaatattatccatgaatatctgtataaactcgcggatacctcaaaa 26187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 13626501 - 13626659
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||         ||||||||| ||||||||||||| |||||     
T  13626501 ataaatgttatccatgaatatctgtataaacccgcggatatctcaaaatatgcggattaccctctaagaggatatccgcccggatatggatagggtacgg 13626600  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  13626601 atttcatatttatctaacgaaacggacacgaatatcacactatccgcatctatggatat 13626659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 5938659 - 5938501
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||         ||||||| ||||||||||||||| ||||||    
T  5938659 ataaatgttatccatggatatttgtataaacccgcagatacttcaaaatctgtggattacccgctaaacggatatccacgcggatatggatagggtacga 5938560  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||| ||||||| |||||||||||| | |||||||||||||    
T  5938559 atttcatatttatctaacggagtggacacggatatcacactattcacatccatggatat 5938501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 5704527 - 5704399
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||         ||||||||||||||||| ||||||||||      
T  5704527 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatcattggattacccgctaaacggatatccgcgcggatatagatagagtacag 5704428  T
Q  115 atttcatatttatctaacggagcggacac 143  Q
    ||||||||||||||||| |||||||||||    
T  5704427 atttcatatttatctaatggagcggacac 5704399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 5110131 - 5109974
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||| | ||||||||         |||||||||  | ||||||||||| ||||     
T  5110131 ataaatgttatccatggatatctgtaaaaatccgcggatacctcaaaatccgtggattacccgctaaacggatatccgcatgaatatggatagaatacgg 5110032  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||| || ||||| |||| ||||||||||||||||||| |||||||||    
T  5110031 atttcatatttatctgacagagcgcacacaaatatcacactatccgcat-catggatat 5109974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 42625222 - 42625376
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggatta-ccg--------atatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |||        ||||||||  |||||||||||| ||||| |||    
T  42625222 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatgaatatccgcatggatatggatagggtacggatt 42625321  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||| ||| ||||||| |||||||||| |||||||||||||||||    
T  42625322 tcatatttatctaac-gagtggacacggatatcacactctccgcatccatggatat 42625376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 13807426 - 13807338
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| |||||||||||||  |||| ||||||||||| |||||||  ||||||||  |||||||||||||||| |||||||||||    
T  13807426 gatatccgcacggatatggataggatacggatttcatatttttctaacgaggcggacacagatatcacactatccgcgtccatggatat 13807338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 31576151 - 31576286
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||||||||||||  |||||| ||||||||| |||||  ||||||||||         ||||||| | ||||||||||||| |||| |    
T  31576151 ataaatgttatccatggatatctgtacaaacccacggatacctaaaaattcgcggattacccgctaaatggatatccacacggatatggatagggtacaa 31576250  T
Q  115 atttcatatttatctaacggagcggacacgaatatc 150  Q
    ||||||||||||| ||| |||| ||||||| |||||    
T  31576251 atttcatatttatataatggagtggacacggatatc 31576286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 45151526 - 45151584
Alignment:
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  45151526 atttcatatttatctaacagagcggacacggatatcacactatccgcatgcatggatat 45151584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 31604686 - 31604598
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| | ||||| ||||  |||| ||||||||||||||| |||||||| ||||| ||||||||||||||||  |||||| ||||    
T  31604686 gatatccgcacagatatagataaggtacaaatttcatatttatccaacggagcagacacaaatatcacactatccgtgtccatgaatat 31604598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 45458588 - 45458648
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc 84  Q
    ||||||||||||||||||||||||| ||||   | |||||| |||||||||| ||||||||    
T  45458588 ataaatgttatccatggatatctgtataaatttgtggatacttcaaaatctgtggattacc 45458648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 45151442 - 45151480
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggat 62  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  45151442 ataaatgttatccatagatatctgtataaacccgcggat 45151480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 41039257 - 41039099
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||| | |||||||||| |||||| ||||||||||         ||||||||| ||||||||||||  |||||     
T  41039257 ataaatgttatccatggatatctgtataaatctgcggatacctaaaaatccgcggattacccgctaaatggatatccgcacggatatggatatggtacgg 41039158  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  41039157 atttcatatttatctaacggagcggacacggatatcacattatccgcatccatggatat 41039099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 23626779 - 23626621
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||         |||||||||  ||||||| |||| ||||||    
T  23626779 ataaatgttatccatggatatatgtataaactcgcggatacctcaaaatctgtggattacctgctaaacggatatccgcatggatatgaatagtgtacga 23626680  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||  ||||||||||||| |||||||||||||  ||||||||||||||    
T  23626679 atttcatatttatccgacggagcggacacaaatatcacactatttgcatccatggatat 23626621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 38951545 - 38951387
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||| |||||||| | ||||||||||  |||||||||||  || ||||| |         ||||||||||||||||||||||||||| ||    
T  38951545 ataaatgttatccacggatatctatataaacccgcgattacctcaaaattcgcagattatccgttaaacggatatccgcgcggatatggatagagtatga 38951446  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  38951445 attttatatttatctaacggaacggacacgaatatcacactctccgcatccatggatat 38951387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 8819575 - 8819663
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||||||| | ||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||    
T  8819575 gatatccgcgcggatatggatagggaacgaatttcatatttgtccaacggagtggacgcgaatatcacactatccgcatccatggatat 8819663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 51357105 - 51356948
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||| |||| ||| |||||||  | ||||||||         |||||||| | |||||||||||| | || |    
T  51357105 ataaatgttatccatggatatctgtataaacctgcgggtac-tcaaaattcgtggattacccgctaaattgatatccgtgtggatatggatagggcacaa 51357007  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||| || ||||||||||||||  ||||||||||||||||||||||||||||    
T  51357006 atttcatatttgtccaacggagcggacacagatatcacactatccgcatccatggatat 51356948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 19841666 - 19841513
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||| || |||||||         ||||||||| | ||||| ||||| |||||     
T  19841666 ataaatgttatccatgaatatctgtataaatccgcggatacctcaaaatcagcagattacccgctaaacggatatccgcacagatatcgatagggtacgg 19841567  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatg 168  Q
    ||||||||||||||  || |||||||||   |||||||||||||||||||||||    
T  19841566 atttcatatttatccgacagagcggacatagatatcacactatccgcatccatg 19841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 42555243 - 42555097
Alignment:
Q  27 aatgttatccatggatatctgtgtaaaccc-gcggatacctcaaaatctgcggattaccgatatc-cgcgcggatatggatagagtacgaatttcatatt 124  Q
    ||||||||||||| |||||||| ||||||| ||||||| ||||||||||   |||||||  ||   ||||| |||||||||||||||| |||||||||||    
T  42555243 aatgttatccatgaatatctgtataaaccccgcggatatctcaaaatctatagattacctgtaaaacgcgcagatatggatagagtacaaatttcatatt 42555144  T
Q  125 tatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| ||||||||||| |   | ||||||||||||||||||||||||||    
T  42555143 tatcaaacggagcggata--tacatcacactatccgcatccatggatat 42555097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 40572168 - 40572254
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||| |||  ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  40572168 gatatccgcatggatatggatagggta--aatttcacatttatctaacggagtggacacgaatatcacactatccacatccatggatat 40572254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 22278152 - 22278076
Alignment:
Q  97 gatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||| ||||| ||||| |||||||||||||| |||||| |||||||| |||||| | ||||  |||||||||||||    
T  22278152 gatattgatagggtacggatttcatatttatccaacggaacggacacggatatcataatatctacatccatggatat 22278076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 40715136 - 40715208
Alignment:
Q  101 tggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||| ||| |||||||||| ||||  |||||| | |||||||||||||||||||| |||||| |||||||    
T  40715136 tggatagggtatgaatttcatacttattcaacggatcagacacgaatatcacactatctgcatccttggatat 40715208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 36465096 - 36465167
Alignment:
Q  94 gcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatcc 165  Q
    |||||||||||||||  |   ||||||||||| || ||||||||||| || |||||||||||||||||||||    
T  36465096 gcggatatggatagaacattgatttcatatttgtccaacggagcggatacaaatatcacactatccgcatcc 36465167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 24916676 - 24916616
Alignment:
Q  113 gaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| ||||||||||| |||| |||||||||| |||||| |||||| || |||||||||||    
T  24916676 gaatatcatatttatccaacgaagcggacacggatatcatactatctgcgtccatggatat 24916616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 55710113 - 55710059
Alignment:
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggata 172  Q
    ||||||||||| ||||||||||||||||  |||| ||||||||  ||||||||||    
T  55710113 tcatatttatccaacggagcggacacgaggatcatactatccgtgtccatggata 55710059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 29116926 - 29116861
Alignment:
Q  64 cctcaaaatctgcggattacc-gatatccgcgcggatatggatagagtacgaatttcatatttatc 128  Q
    ||||||||||  ||||||||| ||||||||||||||||| ||||   ||| |||||||||||||||    
T  29116926 cctcaaaatccacggattacccgatatccgcgcggatattgataagatacaaatttcatatttatc 29116861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 17120487 - 17120547
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc 84  Q
    ||||||||||| ||| ||||||| | ||||| |||||||| |||||||| || ||||||||    
T  17120487 ataaatgttattcatagatatctatataaactcgcggatagctcaaaatttgtggattacc 17120547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 7987430 - 7987588
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||         ||||||||| ||||||||||||| |||||     
T  7987430 ataaatgttatccatggatatctgtataaacccgcagatacctcaaaatccgcagattacccgctaaacggatatccgcacggatatggatagggtacgg 7987529  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| ||||||||||||||  |||||||| |||| ||||||||||||||    
T  7987530 atttcatatttatccaacggagcggacacagatatcacaatatctgcatccatggatat 7987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 36583093 - 36583251
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||| | ||||| ||| |||||||||||||||| ||||||||         |||||||||||||||||| |||| |||||     
T  36583093 ataaatgttatccatggatatctatataaactcgctgatacctcaaaatctgtggattacccgttaaacggatatccgcgcggatatgaatagggtacgg 36583192  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||    
T  36583193 atttcatatttatctaacggaacggacacggatatcatactatacgcatccatggatat 36583251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 7968638 - 7968790
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||| ||| |||||||| ||| |||||||| ||||||||||||||| ||||||||||         ||||||||| ||||||||||||| |||||     
T  7968638 ataaatgtcatctatggatatatgtataaacccgtggatacctcaaaatccgcggattacccgctaaacggatatccgcacggatatggatagggtacgg 7968737  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccat 167  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  7968738 atttcatatttatccaacggagcggacacggatatcacactatctgcatccat 7968790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 8227502 - 8227590
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  8227502 gatatccgcatggatatggatagagtacggatttcatatttatctaacggagcggacacggatatcacactatccacatccatggatat 8227590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 11481286 - 11481199
Alignment:
Q  86 atatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||| |||||||||||||  |||||||||||||||||||||  ||||||||||| |||||||||||||||||||| ||||||||    
T  11481286 atatccgcacggatatggataggatacgaatttcatatttatctattggagcggacacaaatatcacactatccgcatctatggatat 11481199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 31005940 - 31005782
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||| || |||| | |||| |||| |||||||||||||| | |||||| |         |||||||||||| |||||||||| | |||     
T  31005940 ataaatgttatccatagagatctttataaatccgcagatacctcaaaatccgtggattatccgctaaacggatatccgcgcgaatatggatagggcacgg 31005841  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||    
T  31005840 atttcatatttgtccaacggagcggacacggatatcacactatctgcatccatggatat 31005782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 9765276 - 9765346
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacact 155  Q
    ||||||| ||||||||||||||| ||||| |||| |||||||||||||| |||||||||  ||||||||||    
T  9765276 gatatccacgcggatatggatagggtacggatttaatatttatctaacgaagcggacacatatatcacact 9765346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 6870773 - 6870849
Alignment:
Q  97 gatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||| |||||| | |||||||||||||||| |||  ||| |||||| |||| ||| |||||||||||||||||||    
T  6870773 gatatgcatagagaatgaatttcatatttatccaacatagcagacacggatattacattatccgcatccatggatat 6870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 13355726 - 13355588
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||  | ||||||||| ||||||| ||||||||||||||||  |||||||||         ||||||| | || |||| ||||| |||||     
T  13355726 ataaatgttatctttcgatatctgtataaacccacggatacctcaaaatccacggattacctgctaaacggatatccacacgaatatagatagggtacgt 13355627  T
Q  115 atttcatatttatctaacggagcggacacgaatatcaca 153  Q
    ||||||||||||||||| ||| |||| | | ||||||||    
T  13355626 atttcatatttatctaatggaacggatatggatatcaca 13355588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 1e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 42836906 - 42836746
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||| ||  ||||||| |         |||||| || ||||||||||||  ||||      
T  42836906 ataaatgttatccatgaatatctgtgtaaacccgcggatacctaaaactcctcggattatccgttaaatggatatctgcacggatatggatatggtacat 42836807  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatattc 175  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  42836806 atttcatatttatctaacggagcggacacagatatcacactatccgcatccatggatattc 42836746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 40056904 - 40056749
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |         |||||||||  |||||||||||| |||||||||    
T  40056904 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtacgaatt 40056805  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  40056804 tcatatttatctaacggagtggaaacggatatcacactatccgcatccatggatat 40056749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 23429158 - 23429000
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||| |||||| | ||||| ||         ||||||||| ||||||||||||| |||||     
T  23429158 ataaatgttatccatggatatatgtataaactcgcggatacctaaaaatccgtggattgcccgctaaatggatatccgcacggatatggatagggtacgg 23429059  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||| |||||| |||| | ||||||||||||||||||||||| ||||    
T  23429058 atttcatatttatctatcggagcagacaaggatatcacactatccgcatccatgaatat 23429000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 35188800 - 35188958
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||| ||| |||||| |||||||||| ||||||   |||||| |         ||||| ||| ||||||| |||||  |||      
T  35188800 ataaatgttatccatggatatttgtataaacctgcggatacctaaaaatccatggattatccgctaaatggatattcgcacggatatagataggatacag 35188899  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35188900 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 35188958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 39207372 - 39207460
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| |||||||||| || ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  39207372 gatatccgcacggatatggaaagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcatccatggatat 39207460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 3926065 - 3925977
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||| || ||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  3926065 gatatctgcacggatatggatatggtacggatttcatatttatctaacggagcggacacaaatatcacactatccacatccatggatat 3925977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 39800611 - 39800766
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |         |||||| ||  |||||||||||| ||||| |||    
T  39800611 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatctgcatggatatggatagggtacggatt 39800710  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    | ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  39800711 ttatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 39800766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 33742926 - 33743074
Alignment:
Q  26 aaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaat 116  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||  |||||||||         ||||||  | ||||||||||||| ||||| ||    
T  33742926 aaatgttatccatggatatctgtataaacccgcatatacctcaaaatccacggattacccgctaaaaggatatcgacacggatatggatagggtacggat 33743025  T
Q  117 ttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    | ||||||||| ||||||||||        |||||||||||||||||||||||||||    
T  33743026 tacatatttatgtaacggagcg--------tatcacactatccgcatccatggatat 33743074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 2209463 - 2209414
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatc 73  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  2209463 ataaatgttatccatggatatctgtataaacccgcatatacctcaaaatc 2209414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 42879092 - 42879234
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||| ||| |||||| ||| ||||||||| |||| |||||||||         |||||||||  |||||||||||  ||||      
T  42879092 ataaatgttatccatgaatatatgtataaacctgcgaatacctcaacatctacggattacccgctaaacggatatccgccgggatatggatattgtacat 42879191  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactat 157  Q
    |||||||||||||| |||||||  ||||  ||||| |||||||    
T  42879192 atttcatatttatccaacggagtagacataaatattacactat 42879234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 26621297 - 26621249
Alignment:
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcat 163  Q
    ||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  26621297 atttcatatttatttagcggagtggacacggatatcacactatctgcat 26621249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 21985 - 21830
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |         |||||||||  |||||||||||| ||||| |||    
T  21985 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctatatggatatccgcatggatatggatagggtacggatt 21886  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  21885 tcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 21830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 7096 - 7238
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccgatatccgcgcggatatggatagagtacgaatttcatat 123  Q
    ||||||||||||||||||||||||| |||| ||| | |||||| |||||||||||||||||      |||  |||||| ||||| |||||||||||||||    
T  7096 ataaatgttatccatggatatctgtataaatccgtgaatacctaaaaatctgcggattacc------cgcatggatatagatagggtacgaatttcatat 7189  T
Q  124 ttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| ||||||| ||  ||||||||||||| ||||||||||||||    
T  7190 ttatctaac-gagcggatacagatatcacactatctgcatccatggatat 7238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 7766984 - 7766826
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||||| |||||| ||||| |||| |||| |||||||||||||||||||         ||||||| | ||||||||||||   |||      
T  7766984 ataaatgttatccatggaaatctgtataaacgcgcgaatacttcaaaatctgcggattacccgctaaacggatatccacacggatatggataagatacat 7766885  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  7766884 atttcatatttatccaacggagcggacatgaatatcacactatccgcatccatgtatat 7766826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 23809882 - 23810040
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||  |||||||||||| ||||| ||||||||||| |||||| | |||||||          ||||||| | ||||||||||||| |||||     
T  23809882 ataaatgttatttatggatatctgtataaactcgcggatacctaaaaatccgtggattactcgctaaatggatatccccacggatatggatagggtacgg 23809981  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  23809982 atttcatatttatctaacggagtggacacggatatcgcactatccgcatccatggatat 23810040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 30541697 - 30541839
Alignment:
Q  36 catggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatttcatattta 126  Q
    ||||||||||||| |||||| |||||||||||||||||  |||| |||          ||||||||||||||||||||||| ||||| |||||||||| |    
T  30541697 catggatatctgtataaacctgcggatacctcaaaatccacggagtactcgttcaatggatatccgcgcggatatggatagggtacggatttcatattaa 30541796  T
Q  127 tctaacggagcggacacgaatatcacactatccgcatccatgg 169  Q
    || ||||||||||| |||||||||| |||||||||||||||||    
T  30541797 tccaacggagcggatacgaatatcatactatccgcatccatgg 30541839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 38440651 - 38440805
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||| |||||||||||| |||||| || ||||||||||||||  || ||||||         ||||| ||||||||||||       |||||    
T  38440651 ataaatgttatctatggatatctgtataaacctgcagatacctcaaaatccacgaattacctgctaaatggatattcgcgcggatatga------tacga 38440744  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatattc 175  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  38440745 atttcatatttatccaacgaagcggacacgaatatcacactatccgcatccatggatattc 38440805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 5972834 - 5972746
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| || |||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  5972834 gatatccgcacgtatatggatagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcattcatggatat 5972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 25502067 - 25501909
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggatt---------accgatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  | |||||         || |||||| ||||| ||||| |||| |||  |    
T  25502067 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaattcgtggattactagctaaacggatatctgcgcgtatatgaatagggtataa 25501968  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||| ||| | |||||||||| ||  ||| |||||||||    
T  25501967 atttcatatttatctaacggagcgaacatggatatcacactttcaacattcatggatat 25501909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 11039392 - 11039549
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccg--------atatccgcgcggatatggatagagtacgaa 115  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||||||  | ||||  |||        ||| |||| ||||||||||||  |||| ||    
T  11039392 ataaatgtcatccatggatatctgtataaacccgcagatacctcaaaattcgtggatacccgctgaacggatacccgcacggatatggatatggtacaaa 11039491  T
Q  116 tttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||| ||||||| ||||||| |||||| | |||| ||||||||||||||    
T  11039492 tttcatatttatccaacggagtggacacggatatcatattatctgcatccatggatat 11039549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 33189316 - 33189159
Alignment:
Q  25 taaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaa 115  Q
    |||||||||||||||||||||||| ||||| || | ||||||||||||||  ||||||||         |||||||  |||||||| ||||| | ||  |    
T  33189316 taaatgttatccatggatatctgtataaactcgtgaatacctcaaaatctatggattacccgctaaacggatatccatgcggatattgatagggcacata 33189217  T
Q  116 tttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||| ||||||| ||||||| |||||| |||||| |||||||| |||||    
T  33189216 tttcatatttatcaaacggagtggacacggatatcaaactatctgcatccatagatat 33189159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 27336863 - 27336711
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |         |||||||||  |||||||||||| ||  | |||    
T  27336863 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtctggatt 27336764  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatgga 170  Q
    |||||||||||||||| || ||||||| ||||||||||||| |||||||||||    
T  27336763 tcatatttatctaacgaagtggacacggatatcacactatctgcatccatgga 27336711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 2944273 - 2944333
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc 84  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  2944273 ataaatattatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacc 2944333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 22519395 - 22519553
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||| ||||||||||||| ||| ||||||||  ||||||| |||||  | ||||||||         ||||||| |||||||| |||||| |||||     
T  22519395 ataaatgatatccatggatatttgtataaacccgatgataccttaaaattcgtggattacctgctaaatggatatccacgcggatacggatagggtacgg 22519494  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||| ||||| ||| |||| ||||  ||||| |||||||||| ||||||||||||    
T  22519495 atttcataattatccaaccgagcagacaaaaatattacactatccgtatccatggatat 22519553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 1053384 - 1053440
Alignment:
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggat 171  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||    
T  1053384 atttcatatttgtctaatggagcggacacggatatcacactatctgcatccatggat 1053440  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 5972886 - 5972848
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggat 62  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  5972886 ataaatgttatccatggatatttgtataaacccgcggat 5972848  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 36298702 - 36298654
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaat 72  Q
    |||| |||||||||||||||||||| ||||  | |||||||||||||||    
T  36298702 ataagtgttatccatggatatctgtataaattcacggatacctcaaaat 36298654  T

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Target: scaffold0691 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 7771 - 7683
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  7771 gatatccgcatggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 7683  T

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Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 66513 - 66366
Alignment:
Q  32 tatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatttcata 122  Q
    ||||||||||||||||| ||| ||||||||||||||||||||   | ||||||          |||| ||| | ||||||||||| |  |  ||||||||    
T  66513 tatccatggatatctgtataatcccgcggatacctcaaaatccatgaattacccgctaaataaatattcgcacagatatggatagggctcagatttcata 66414  T
Q  123 tttatctaacggagcggacacgaatatcacactatccgcatccatgga 170  Q
    ||| || || ||||| ||||| ||||||||||||||||||||||||||    
T  66413 tttgtccaatggagctgacacaaatatcacactatccgcatccatgga 66366  T

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Target: scaffold0246 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 10793 - 10840
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaac 132  Q
    |||||||||| ||||||| |||| ||||| ||||||||||||||||||    
T  10793 gatatccgcgtggatatgaatagggtacggatttcatatttatctaac 10840  T

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