View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_low_4 (Length: 685)

Name: NF18717_low_4
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_low_4
NF18717_low_4
[»] chr5 (8 HSPs)
chr5 (262-605)||(7141214-7141557)
chr5 (13-236)||(7140993-7141216)
chr5 (383-604)||(7154105-7154326)
chr5 (21-235)||(7152832-7153046)
chr5 (424-504)||(7131652-7131732)
chr5 (126-213)||(7130752-7130839)
chr5 (607-668)||(7154477-7154539)
chr5 (604-668)||(7141704-7141769)
[»] chr6 (3 HSPs)
chr6 (425-596)||(12425433-12425604)
chr6 (425-596)||(12268081-12268252)
chr6 (387-469)||(12438646-12438728)
[»] chr4 (2 HSPs)
chr4 (425-605)||(55958653-55958833)
chr4 (428-597)||(55955105-55955274)
[»] chr3 (1 HSPs)
chr3 (603-669)||(22986270-22986337)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 262 - 605
Target Start/End: Original strand, 7141214 - 7141557
Alignment:
Q  262 ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatattattgaa 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141214 ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatattattgaa 7141313  T
Q  362 ttctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaat 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141314 ttctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaat 7141413  T
Q  462 ccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagt 561  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141414 ccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagt 7141513  T
Q  562 tagtgatcaaagaaacattgaggttacacccaccttctcctttg 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7141514 tagtgatcaaagaaacattgaggttacacccaccttctcctttg 7141557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 7140993 - 7141216
Alignment:
Q  13 aaaatgttgagaaaattcacaaaagggtagacaaaatcttagataatgttgtgagaaaacatcaagaaaagagagcaagaggaaatgaaggtaacaagag 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7140993 aaaatgttgagaaaattcacaaaagggtagacaaaatcttggataatgttgtgagaaaacatcaagaaaagagagcaagaggaaatgaaggtaacaagag 7141092  T
Q  113 tgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7141093 tgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggtagccttgatgtccaattgacaatcaacaacatcaaagctgtgatt 7141192  T
Q  213 tgggttagtaacacttaacttata 236  Q
    ||||||||||||||||||||||||    
T  7141193 tgggttagtaacacttaacttata 7141216  T

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Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 383 - 604
Target Start/End: Original strand, 7154105 - 7154326
Alignment:
Q  383 atttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggca 482  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||  | || |||    
T  7154105 atttcaggacgtatttgttgccggaactgatacaacatcgacaacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagca 7154204  T
Q  483 caagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattga 582  Q
    ||||||||| ||||| |||||||||| || ||| || |||||| |||| ||||| || |  |||||| |||||| ||||||||||||||||||||| |||    
T  7154205 caagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatga 7154304  T
Q  583 ggttacacccaccttctccttt 604  Q
    |||||||||||||||| |||||    
T  7154305 ggttacacccaccttcaccttt 7154326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 7152832 - 7153046
Alignment:
Q  21 gagaaaattcacaaaagggtagacaaaatcttagataatgttgtgagaaaacatcaagaaaagagagcaagaggaaatgaaggtaacaagagtgaaattg 120  Q
    ||||||||||||||  | |||||||||||| | || ||  || | ||| |||||||||||||| ||| ||||| ||| ||||   |||| | |||| |||    
T  7152832 gagaaaattcacaagcgtgtagacaaaatcattgaaaacattattagacaacatcaagaaaagcgagaaagagcaaaagaagacgacaacaatgaagttg 7152931  T
Q  121 agaaggaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgatttgggttag 220  Q
    | || ||||||||| | |||||||||||| |||||||||||||||  | ||||||| || || | |||| ||||||||||||||||||||||||||||||    
T  7152932 ataacgaagatcttctagatgttcttttgcgagtccaacaaagtgataaccttgatatcaaaataacaaccaacaacatcaaagctgtgatttgggttag 7153031  T
Q  221 taacacttaacttat 235  Q
    | ||| | |||||||    
T  7153032 ttacaatgaacttat 7153046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 424 - 504
Target Start/End: Original strand, 7131652 - 7131732
Alignment:
Q  424 caacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcat 504  Q
    ||||||||| |||||| ||||||||| |||||||||| ||||| |||| ||| ||||||||||||||| ||||| ||||||    
T  7131652 caacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagcat 7131732  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 7130752 - 7130839
Alignment:
Q  126 gaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgattt 213  Q
    ||||||||||| ||||| ||||||||| ||||| ||||||||||||||||  ||| | | ||||  | ||||||||||||||||||||    
T  7130752 gaagatcttgttgatgtgcttttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgattt 7130839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 668
Target Start/End: Original strand, 7154477 - 7154539
Alignment:
Q  607 tagttttattgatttcaaaggaaataactttgagtatattcc-tttggtgctagaaggagaat 668  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||| |||||    
T  7154477 tagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaat 7154539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 668
Target Start/End: Original strand, 7141704 - 7141769
Alignment:
Q  604 tgatagttttattgatttcaaaggaaataactttgagtatattccttt-ggtgctagaaggagaat 668  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||| ||||||||||    
T  7141704 tgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaat 7141769  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 425 - 596
Target Start/End: Complemental strand, 12425604 - 12425433
Alignment:
Q  425 aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata 524  Q
    ||||||||| ||||||||||||||  | |||||||| |||||||||| ||||||||||||||||||| ||||| ||||  | || |||||| |   ||||    
T  12425604 aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaata 12425505  T
Q  525 tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacct 596  Q
    ||||| | |||| || | |||||  | ||||| ||||||||||||||||||||  |||||||||||||||||    
T  12425504 tatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacct 12425433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 425 - 596
Target Start/End: Original strand, 12268081 - 12268252
Alignment:
Q  425 aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata 524  Q
    ||||||||| ||||||||||||||  | |||||||| || |||||||||| ||| |||||||||||| ||||| |||  |  || |||||| |   |||     
T  12268081 aacaatagattgggctatgtcagagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataagagaagtttgtaaaggtaagaagagaatt 12268180  T
Q  525 tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacct 596  Q
    ||||||| |||| |  |  |||| |||||||| |||| |||||||||||||||  |||||||||||||||||    
T  12268181 tatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaaaccctgaggttacacccacct 12268252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 387 - 469
Target Start/End: Complemental strand, 12438728 - 12438646
Alignment:
Q  387 caggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagt 469  Q
    |||||| ||||| ||||||||| ||  |||||| | |||||  ||||||||||  | ||||||||| ||||||||||||||||    
T  12438728 caggatatattttttgctggaagtgggacatcagctacaactttagaatgggccttttcagaaatgttgaaaaatccaagagt 12438646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 425 - 605
Target Start/End: Complemental strand, 55958833 - 55958653
Alignment:
Q  425 aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata 524  Q
    ||||||||| ||||| ||||||||  |||||||||| |||||||||| ||||||||||||| ||||| ||||| || | || || |||||  |   || |    
T  55958833 aacaatagactgggcaatgtcagagttgatgaaaaacccaagagtgatgaagaaggcacaatctgaaataagagaaacctttaaaggtaaaaagagaaca 55958734  T
Q  525 tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccaccttctcctttg 605  Q
    ||||| | |||| || |  |||| |||||||| || | |||||||||||||||  |||||||||| |||||| || |||||    
T  55958733 tatgagagtgatctacaagaacttagttacttgaattcagtgatcaaagaaactatgaggttacatccacctgctactttg 55958653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 428 - 597
Target Start/End: Complemental strand, 55955274 - 55955105
Alignment:
Q  428 aatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatat 527  Q
    |||||| ||||||||||||||  ||||||||||  ||||||||| |||||| |||||| | ||| ||||| ||||  | || || ||  |   |||||||    
T  55955274 aatagagtgggctatgtcagagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatat 55955175  T
Q  528 gaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacctt 597  Q
    || | |||| || |  |||| |||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  55955174 gagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt 55955105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 603 - 669
Target Start/End: Complemental strand, 22986337 - 22986270
Alignment:
Q  603 ttgatagttttattgatttcaaaggaaataactttgagtatattcc-tttggtgctagaaggagaatt 669  Q
    ||||||||| ||||||||||||||||| ||| |||||||| ||||| ||||||||| |||||||||||    
T  22986337 ttgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaaggagaatt 22986270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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