View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18717_low_5 (Length: 593)
Name: NF18717_low_5
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 5370376 - 5370747
Alignment:
| Q |
16 |
aatatggttggtttttagaaattttgatgaacatgttatttgccgagctagacataaggtggaatgcactaaagagatgctacaatcactactaaatttg |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5370376 |
aatatggttggtttttagaaattt-gatgaacatgttatttgccgagctagacataaggtggaatgcactaaagagatgctacaatcactactaaatttg |
5370474 |
T |
|
| Q |
116 |
tcaaagtagccaaactgaccaagcctgctgcagatattatccctagagctgatcagtctggtacaaactagcaaaaggggaagaaaatgttccatctcct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5370475 |
tcaaagtagccaaactgaccaagcctgctgcagatattatccctagagctgatcagtctggtacaaactagcaaaaggggaagaaaatgttccatctcct |
5370574 |
T |
|
| Q |
216 |
catagttctcttctccagagttattattatgctgaattttattgaaggtgtgcattgtattgtaggtctggtgttttcttgttatttcagttaatttgaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5370575 |
catagttctcttctccagagttattattatgctgaattttattgaaggtgtgcattgtattgtaggtctggtgttttcttgttatttcagttaatttgaa |
5370674 |
T |
|
| Q |
316 |
aatgagggtgtttcagttatttgtttctaggggatttgggatgttacacactcaagtgtatgttaggattcac |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5370675 |
aatgagggtgtttcagttatttgtttctaggggatttgggatgttacacactcaagtgtatgttaggattcac |
5370747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 455 - 593
Target Start/End: Original strand, 5370814 - 5370952
Alignment:
| Q |
455 |
gttctcagttatgtttattggagaagtctaaatgaaactacaattaaagacgtcctgttttctctccttggcaatgatcacatccatatgaaaatagtaa |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5370814 |
gttctcagttatgtttattggagaagtctaaatgaaactacaattaaagacgtcctgttttctctccttggcaatgatcacatccatatgaaaatagtat |
5370913 |
T |
|
| Q |
555 |
atgtaattgggtaagcattattctaagtaatggttaagt |
593 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5370914 |
gtgtaattgggtaagaattattctaagtaatggttaagt |
5370952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 5364422 - 5364480
Alignment:
| Q |
42 |
atgaacatgttatttgccgagctagacataaggtgg-aatgcactaaagagatgctaca |
99 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
5364422 |
atgaacatgttatttgcagagctagacgtaaggtggaaatgcactaaaaagatgctaca |
5364480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 5376411 - 5376488
Alignment:
| Q |
240 |
tattatgctgaattttattgaaggtgtgcattgtattgtaggtctggtgttttcttgttatttcagttaatttgaaaat |
318 |
Q |
| |
|
||||||| |||||||| |||| ||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
5376411 |
tattatgttgaatttttttga-ggtttgcattgtattgtatgtctgaagttttcttgttatttaagttaatctgaaaat |
5376488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 1267210 - 1267289
Alignment:
| Q |
143 |
ctgcagatattatccctagagctgatcagtctggtacaaactagcaaaaggggaagaaaatgttccatctcctcatagttctc |
225 |
Q |
| |
|
|||||||||||||| ||||| |||| || |||| ||| ||| |||||||| | |||||| ||||||||||||| ||||||| |
|
|
| T |
1267210 |
ctgcagatattatctctagaactga---gtttggtgcaagctaccaaaagggaaggaaaatattccatctcctcacagttctc |
1267289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University