View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_6 (Length: 564)
Name: NF18717_low_6
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 4091609 - 4092151
Alignment:
| Q |
1 |
aggaatgcttctgtttggaatgtctttgaannnnnnnattcccacttctttacaaagctctgcatctgctatgattataagaggttgtcttcccatatga |
100 |
Q |
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| T |
4091609 |
aggaatgcttctgtttggaatttctttgaattttttaattcccacttctttacaaagctctgcatctgctatgattataagaggttgtcttcccatatga |
4091708 |
T |
|
| Q |
101 |
aatctgctccatttaacaaatatgaacaatatcatcaacagtaataattattttaatatttgacttacatcaaaattttcttttaaaattgattttgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4091709 |
aatctgctccatttaacaaatatgaacaatatcatcaacagtaataattattttaatatttgacttgcatcaaaattttcttttaaaattgattttgcta |
4091808 |
T |
|
| Q |
201 |
atctcattaattattattnnnnnnnntaaagattaatatttgttttaatttagaaaatatcctaaataaaatattaaccctagtctcaaacttgcatgta |
300 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091809 |
atctcatta----ttattaaaaaaaataaagattaatatttgttttaatttagaaaatatcctaaataaaatattaaccctagtctcaaacttgcatgta |
4091904 |
T |
|
| Q |
301 |
ataacaaatgctagcatccaaatacacaagtagtannnnnnnnccccaagcattatccactaggctagggttcgtagccatcatgactaggctgaagttc |
400 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091905 |
ataacaaatgctagcatccaaatacacaagtagtattttttt-ccccaagcattatccactaggctagggttcgtagccatcatgactaggctgaagttc |
4092003 |
T |
|
| Q |
401 |
atcctcatcaaaaagggtttgaagattttgcatatcatgacatgtattcaacttgatcttgattccaacaataacagcttcnnnnnnnatccttctcaac |
500 |
Q |
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| T |
4092004 |
atcctcatcaaaaagggtttgaagattttgcatatcatgacatgtattcaacttgatcttgattccaacaataacagcttctttttttatccttctcaac |
4092103 |
T |
|
| Q |
501 |
cagagaactaaaagaaaaagaggaagaaagataaataaagtgataaat |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092104 |
cagagaactaaaagaaaaagaggaagaaagataaataaagtgataaat |
4092151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 48182422 - 48182321
Alignment:
| Q |
6 |
tgcttctgtttggaatgtctttgaannnnnnnattcccacttctttacaaagctctgcatctgctatgattataagaggttgtcttcccatatgaaatct |
105 |
Q |
| |
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|||||||||||||||||||||| || ||||| || |||||||| || ||||||||||||| ||||| || || |||||||||||||||||||| |
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| T |
48182422 |
tgcttctgtttggaatgtctttaaattttttgattccaacctctttacacagttctgcatctgctactattattagtggctgtcttcccatatgaaatct |
48182323 |
T |
|
| Q |
106 |
gc |
107 |
Q |
| |
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|| |
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|
| T |
48182322 |
gc |
48182321 |
T |
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