View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_8 (Length: 544)
Name: NF18717_low_8
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 219 - 532
Target Start/End: Complemental strand, 39864027 - 39863714
Alignment:
| Q |
219 |
ttggtcttagtagtgtctttgcaccacatggaaaactcttgaaggcaggtgaaatatgctacaataagaaactagcagaaactcttagtttaattgcaaa |
318 |
Q |
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| T |
39864027 |
ttggtcttagtagtgtatttgcaccacatggaaaactcttgaaaccaggtgaaatatgttataataagaaactaggagcaagtctaaaagcaattgcgaa |
39863928 |
T |
|
| Q |
319 |
gtttggtccacaagctttttatggtggaataattggcattaatttagttaaagatgtttagaaggcttgagggatattgacattggaagacctcaaaaag |
418 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
39863927 |
gtttggtccacaagctttgtatggtggaataattggcattaatttagttaaagatgttcagaaggccggcgggatattgacattggaagacctcaaaaag |
39863828 |
T |
|
| Q |
419 |
tacactgttaaataaaaggaacctatatctatagattttcttggattaaagatccttggtatgcctcctccttcaggtgggcctcaaatgatgctggtaa |
518 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863827 |
tacactgttaaacaaaaggaacctatatctatagattttcttggattaaagatccttggtatgcctcctccttcaggtgggcctcaaatgatgctggtaa |
39863728 |
T |
|
| Q |
519 |
gttgattttctgtg |
532 |
Q |
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|||||||| ||||| |
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| T |
39863727 |
gttgatttgctgtg |
39863714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 221 - 526
Target Start/End: Complemental strand, 27115309 - 27115004
Alignment:
| Q |
221 |
ggtcttagtagtgtctttgcaccacatggaaaactcttgaaggcaggtgaaatatgctacaataagaaactagcagaaactcttagtttaattgcaaagt |
320 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||| | ||||| | || ||||| | |||| |
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| T |
27115309 |
ggtcttcgtagtgtgtttgcaccacatggaaaactcttgaaagtaggtgaactattttacaataagaaactaggaaaaactttaagagtaatttctaagt |
27115210 |
T |
|
| Q |
321 |
ttggtccacaagctttttatggtggaataattggcattaatttagttaaagatgtttagaaggcttgagggatattgacattggaagacctcaaaaagta |
420 |
Q |
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||||||| ||||||| ||||||||| ||||||| | || |||||||||||||| |||||||| ||||||||| || ||||||||||||||| || |
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| T |
27115209 |
atggtccaaaagctttctatggtggaccaattggcctcaacctagttaaagatgttcagaaggctaaagggatattaactgtggaagacctcaaaagata |
27115110 |
T |
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| Q |
421 |
cactgttaaataaaaggaacctatatctatagattttcttggattaaagatccttggtatgcctcctccttcaggtgggcctcaaatgatgctggtaagt |
520 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
27115109 |
cactgttaaaccaaaggaacctatatctatagattttcttggattaaaactccttagtatgcctcctccttcaggtggacctgcaatgatgctggtaagt |
27115010 |
T |
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| Q |
521 |
tgattt |
526 |
Q |
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|||||| |
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| T |
27115009 |
tgattt |
27115004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 39864317 - 39864221
Alignment:
| Q |
129 |
acgctatagtcaataaatttgttgaaatcactcttctatgcaatata----atacatccattttttccaggatatgtatggtggcaacactactttg |
221 |
Q |
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|||||||||| ||| ||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39864317 |
acgctatagtgaatgaatttgtcgaaatcaatcttctatgccatatacatgatacatccattttttccaggatatgtatggtggcaacattactttg |
39864221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39865158 - 39865101
Alignment:
| Q |
1 |
tccaatttggcctatgcttctgccaaaaatggactcacaaaaacaagaaacgaagtaa |
58 |
Q |
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|||| |||||| | |||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
39865158 |
tccagtttggcatctgcttctgccaaaaatggacacacaaaaacaagaaatgaagtaa |
39865101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 27115540 - 27115505
Alignment:
| Q |
186 |
tttttccaggatatgtatggtggcaacactactttg |
221 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
27115540 |
tttttccaggatatgtatggtggcaatactactttg |
27115505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 36341068 - 36341001
Alignment:
| Q |
129 |
acgctatagtcaataaatttgttgaaatcactcttctatgcaatataatacatccattttttccagga |
196 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36341068 |
acgctatagtcaatgaatttgttgaaatcactcttctatgcaatataatacatccattttttccagga |
36341001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36341925 - 36341868
Alignment:
| Q |
1 |
tccaatttggcctatgcttctgccaaaaatggactcacaaaaacaagaaacgaagtaa |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36341925 |
tccaatttggcctatgcttctgccaaaaatggactcacaaaaacaagaaacgaagtaa |
36341868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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