View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18718_high_11 (Length: 238)
Name: NF18718_high_11
Description: NF18718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18718_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39243308 - 39243088
Alignment:
| Q |
1 |
ccagagataatccaccacaacatactacaagtatttgaagaaannnnnnnnnnnnnnnnnctaactaaaataatactaacatatttaatctcacaaatac |
100 |
Q |
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| T |
39243308 |
ccagagataatccaccacaacatactacaagtatttgaagcaaatatatcatatctatatctaactaaaataatactaacatatttaatctcacaaatac |
39243209 |
T |
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| Q |
101 |
atacctcgtatccatgatcgcggagccgctgagaaactatttgagaactttgtaagaactcttgttcagaaattatccagcaaaagcaatcataggaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39243208 |
atacctcgtatccatgatcgcggagccgctgagaaactatttgagcactttgtaagaactcttgttcagaaattatccagcaaaagcaatcataggaatt |
39243109 |
T |
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| Q |
201 |
ccaacctcttggtggggtgct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39243108 |
ccaacctcttggtggggtgct |
39243088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 37382012 - 37381898
Alignment:
| Q |
101 |
atacctcgtatccatgatcgcggagccgctgagaaactatttgagaactttgtaagaactcttgttcagaaattatccagcaaaagcaatcataggaatt |
200 |
Q |
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|||||||||||||||| ||||| |||||||||| |||| || | | |||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
37382012 |
atacctcgtatccatgtggacggagacgctgagaaataatttcagcattctgtaagaactcttgttcagaaattatccaggaaaaggcatcataggaatt |
37381913 |
T |
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| Q |
201 |
ccaacctcttggtgg |
215 |
Q |
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| T |
37381912 |
ccaacctcttggtgg |
37381898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 37374656 - 37374562
Alignment:
| Q |
121 |
cggagccgctgagaaactatttgagaactttgtaagaactcttgttcagaaattatccagcaaaagcaatcataggaattccaacctcttggtgg |
215 |
Q |
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| T |
37374656 |
cggagacgctgagaaacaatttgagcattctgtaagaattcttgttcagaaattatccaggaaaatgcatcataggaattccaacctcttggtgg |
37374562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 37359857 - 37359743
Alignment:
| Q |
101 |
atacctcgtatccatgatcgcggagccgctgagaaactatttgagaactttgtaagaactcttgttcagaaattatccagcaaaagcaatcataggaatt |
200 |
Q |
| |
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||||||| ||||| ||| | |||| || |||||||||| || || | |||||||||| |||| ||||||||||||||| ||||| |||||||||||| |
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| T |
37359857 |
atacctcatatccgtgagcaaggagacgttgagaaactaattcagcattttgtaagaattcttcttcagaaattatccaagaaaaggcatcataggaatt |
37359758 |
T |
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| Q |
201 |
ccaacctcttggtgg |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
37359757 |
ccaacctcttggtgg |
37359743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 37368207 - 37368321
Alignment:
| Q |
101 |
atacctcgtatccatgatcgcggagccgctgagaaactatttgagaactttgtaagaactcttgttcagaaattatccagcaaaagcaatcataggaatt |
200 |
Q |
| |
|
||||||| ||||| ||| | |||| || |||||||||| || || | |||||||||| |||| ||||||||||||||| ||||| |||||||||||| |
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| T |
37368207 |
atacctcatatccgtgagcaaggagacgttgagaaactaattcagcattttgtaagaattcttcttcagaaattatccaagaaaaggcatcataggaatt |
37368306 |
T |
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| Q |
201 |
ccaacctcttggtgg |
215 |
Q |
| |
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||||||||||||||| |
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| T |
37368307 |
ccaacctcttggtgg |
37368321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 41230575 - 41230689
Alignment:
| Q |
101 |
atacctcgtatccatgatcgcggagccgctgagaaactatttgagaactttgtaagaactcttgttcagaaattatccagcaaaagcaatcataggaatt |
200 |
Q |
| |
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||||||| ||||||||| | | || |||||||||||||||| || | | |||||||| |||| |||||| |||||||| |||| |||| |||||||| |
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| T |
41230575 |
atacctcatatccatgagcatgaagacgctgagaaactatttcagcattctgtaagaattcttcttcagatattatccacgaaaatgaatcgtaggaatt |
41230674 |
T |
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| Q |
201 |
ccaacctcttggtgg |
215 |
Q |
| |
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||| ||||||||||| |
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| T |
41230675 |
ccaccctcttggtgg |
41230689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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