View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18718_high_7 (Length: 297)

Name: NF18718_high_7
Description: NF18718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18718_high_7
NF18718_high_7
[»] chr8 (10 HSPs)
chr8 (1-287)||(548712-548998)
chr8 (111-287)||(23423716-23423892)
chr8 (1-87)||(23423630-23423716)
chr8 (111-287)||(894464-894640)
chr8 (111-255)||(906003-906147)
chr8 (169-255)||(1963481-1963567)
chr8 (182-232)||(566327-566377)
chr8 (175-255)||(2014862-2014942)
chr8 (175-255)||(2018245-2018325)
chr8 (175-255)||(2436899-2436979)
[»] scaffold0428 (1 HSPs)
scaffold0428 (178-255)||(1348-1425)
[»] chr6 (4 HSPs)
chr6 (174-255)||(845020-845101)
chr6 (174-255)||(870304-870385)
chr6 (178-255)||(33257230-33257307)
chr6 (112-255)||(8294448-8294591)
[»] scaffold0184 (1 HSPs)
scaffold0184 (178-254)||(15200-15276)
[»] scaffold0078 (1 HSPs)
scaffold0078 (178-254)||(57568-57644)
[»] chr7 (1 HSPs)
chr7 (215-255)||(41511443-41511483)
[»] chr1 (1 HSPs)
chr1 (175-255)||(5906147-5906227)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 548998 - 548712
Alignment:
Q  1 aatcaagtggttgcaattttttgtgggttattagagttccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagggtaattttaatta 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548998 aatcaagtggttgcaattttttgtgggttattagaattccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagggtaattttaatta 548899  T
Q  101 tactcttgatgatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548898 tactcttgatgatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaa 548799  T
Q  201 attcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548798 attcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 548712  T

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Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 111 - 287
Target Start/End: Original strand, 23423716 - 23423892
Alignment:
Q  111 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423716 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 23423815  T
Q  211 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423816 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 23423892  T

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Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 23423630 - 23423716
Alignment:
Q  1 aatcaagtggttgcaattttttgtgggttattagagttccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23423630 aatcaagtggttgcaattttttgtgggttattagagttccaaataagcactcaaattctgcttattttagtggatcttcaaaaaagg 23423716  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 287
Target Start/End: Complemental strand, 894640 - 894464
Alignment:
Q  111 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 210  Q
    |||||||||||| |||||||||||   |||||  ||||||| || |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  894640 gatgatccattagattatttaccaagtggttttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 894541  T
Q  211 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 287  Q
    || | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||    
T  894540 atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatg 894464  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 111 - 255
Target Start/End: Original strand, 906003 - 906147
Alignment:
Q  111 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 210  Q
    |||||||||||| | |||||||||   |||||||||||||| |  |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  906003 gatgatccattagagtatttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 906102  T
Q  211 atagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    || | |||| |||||| ||||||| ||||||||||||| ||||||    
T  906103 atggatcaattggtgggtttttgagtcattgtggttggggttcaa 906147  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 1963481 - 1963567
Alignment:
Q  169 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    |||| |||||||||||||| |||||  || |||| |||||||| ||||| | |||||| |||||| ||||||||||||||| |||||    
T  1963481 tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaa 1963567  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 566377 - 566327
Alignment:
Q  182 atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt 232  Q
    |||||| |||||||||||||||||| |||||||||||| || ||| |||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt 566327  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 2014942 - 2014862
Alignment:
Q  175 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2014942 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2014862  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 2018325 - 2018245
Alignment:
Q  175 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2018325 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2018245  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 2436899 - 2436979
Alignment:
Q  175 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    ||||||||||||| ||||| ||| |||| |||||||| || |||  ||||||||| |||| ||| ||||| |||| |||||    
T  2436899 ttccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaa 2436979  T

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Target: scaffold0428 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 1348 - 1425
Alignment:
Q  178 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  1348 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 1425  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 845101 - 845020
Alignment:
Q  174 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  845101 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 845020  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 870385 - 870304
Alignment:
Q  174 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  870385 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 870304  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 33257230 - 33257307
Alignment:
Q  178 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  33257230 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 33257307  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 255
Target Start/End: Complemental strand, 8294591 - 8294448
Alignment:
Q  112 atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca 211  Q
    ||||||||||| | |||||||||   ||||| |||||||| || |||||  | ||  | || ||| |||||||||| ||||||||||| |||||| ||||    
T  8294591 atgatccattagagtatttaccaaatggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 8294492  T
Q  212 tagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    | | |||| |||||| ||||| | ||||||||||||||||||||    
T  8294491 tggatcaattggtgggtttttaagtcattgtggttggagttcaa 8294448  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  178 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 254  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  178 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 254  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 41511443 - 41511483
Alignment:
Q  215 ttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    ||||| |||||| |||||||||||||||||||||| |||||    
T  41511443 ttcaattggtggatttttgactcattgtggttggaattcaa 41511483  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 5906147 - 5906227
Alignment:
Q  175 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 255  Q
    ||||||||||||| || ||  ||||||| |||||||| |  |||  |||||| || |||| ||||||||||||||||||||    
T  5906147 ttccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa 5906227  T

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