View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18718_high_8 (Length: 290)

Name: NF18718_high_8
Description: NF18718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18718_high_8
NF18718_high_8
[»] chr3 (19 HSPs)
chr3 (10-275)||(19581803-19582085)
chr3 (10-151)||(18478689-18478830)
chr3 (10-186)||(19594052-19594211)
chr3 (57-167)||(19539621-19539731)
chr3 (10-72)||(19604303-19604365)
chr3 (10-72)||(19654132-19654194)
chr3 (95-152)||(19626624-19626681)
chr3 (10-67)||(19549734-19549792)
chr3 (69-177)||(32150345-32150452)
chr3 (219-272)||(19594242-19594295)
chr3 (78-136)||(19557789-19557847)
chr3 (184-227)||(19557908-19557951)
chr3 (90-142)||(19654195-19654248)
chr3 (10-62)||(19557739-19557790)
chr3 (95-142)||(19604371-19604419)
chr3 (10-45)||(18478868-18478903)
chr3 (113-167)||(19564004-19564059)
chr3 (57-103)||(19617954-19618000)
chr3 (184-229)||(32150242-32150287)
[»] chr6 (1 HSPs)
chr6 (10-75)||(18025656-18025716)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 19581803 - 19582085
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatatatgtttgaaacatatatatcaagtatgtatacattgtgcttcttggcagaagaataaatggaga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19581803 ataagaaacattttcctccaaagcttttatttatatatgtttgaagtatatatatcaagtatgtatacattgtgattcttggcagaagaataaatggaga 19581902  T
Q  110 acttgaaagtatgtggccaagctcaatgtgaaatcaagaaaga-gatggacttgtgcaatttaaacacag----------------aataatgtgttttc 192  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||| |||| |||||| ||||||||||                ||||||||||||||    
T  19581903 acttgaaagtatgtggccaagctcaatatgaaataaagaaagaggatagactcgtgcaacttaaacacagaataatgtgttggaccaataatgtgttttc 19582002  T
Q  193 gtcttgtatcaatgagcattttcctttgaataatatatcttgaaataatatatctgtatgtgtatgtgtaaatcagttgataa 275  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19582003 gtcttgtatcaatgagcattttccttttaataatatatcatgaaataatatatctgtatgtgtatgtgtaaatcagttgataa 19582085  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 18478830 - 18478689
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatatatgtttgaaacatatatatcaagtatgtatacattgtgcttcttggcagaagaataaatggaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  18478830 ataagaaacattttcctccaaagcttttatttatatatgtttgaagcatatatatcaagaatgtatgcattgtgattcttggcagaagaataaatggaga 18478731  T
Q  110 acttgaaagtatgtggccaagctcaatgtgaaatcaagaaag 151  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  18478730 acttgaaagtatgtggccaagctcaatatgaaataaagaaag 18478689  T

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Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 19594052 - 19594211
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatatatgtttgaaacatatatatcaagtatgtatacattgtgcttcttggcagaagaataaatggaga 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||                 ||||| |||||||| ||||||    
T  19594052 ataagaaacatcttcctccaaagcttttatttatatatgtttgaagaatatatatcaagtat-----------------tggcataagaataagtggaga 19594134  T
Q  110 acttgaaagtatgtggccaagctcaatgtgaaatcaagaaagagatggacttgtgcaatttaaacacagaataatgt 186  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  19594135 acttgaaagtatgtggccaagctcaatgtgaaataaagaaagagatagacttgtgcaacttaaacacagaataatgt 19594211  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 19539621 - 19539731
Alignment:
Q  57 atatatatcaagtatgtatacattgtgcttcttggcagaagaataaatggagaacttgaaagtatgtggccaagctcaatgtgaaatcaagaaagagatg 156  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||     
T  19539621 atatatatcaagtatgtatactttgtgattcttggtagaagaataaatggagaacttgaaattatgtggccaagctcaatatgaaataaagaaagagata 19539720  T
Q  157 gacttgtgcaa 167  Q
    |||||||||||    
T  19539721 gacttgtgcaa 19539731  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 19604303 - 19604365
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatatatgtttgaaacatatatatcaagtatg 72  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19604303 ataagaaacatcttcctccaaagcttttatttatatatgtttgaagcatatatatcaagtatg 19604365  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 19654132 - 19654194
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatatatgtttgaaacatatatatcaagtatg 72  Q
    ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  19654132 ataagaaacatctttctccaaagcttttatttatatatgtttgaagcatatatatcaaatatg 19654194  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 19626624 - 19626681
Alignment:
Q  95 aagaataaatggagaacttgaaagtatgtggccaagctcaatgtgaaatcaagaaaga 152  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  19626624 aagaataagtggagaacttgaaagtatgtggccaagctcaatgtgaaataaagcaaga 19626681  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 19549734 - 19549792
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatatatg-tttgaaacatatatatcaa 67  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||    
T  19549734 ataagaaacatcttcctccaaagcttttatttatatatgttttgaagcatatatatcaa 19549792  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 32150452 - 32150345
Alignment:
Q  69 tatgtatacattgtgcttcttggcagaagaataaatggagaacttgaaagta-tgtggccaagctcaatgtgaaatcaagaaagagatggacttgtgcaa 167  Q
    |||||||| ||| || |||| ||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||  ||||| ||||| |||  ||||||    
T  32150452 tatgtatagattttgattctgggcagaagaataagtggagaacttgaatgtagtctggccaagctcaatgtgaaagaaagaatgagatagac--gtgcaa 32150355  T
Q  168 tttaaacaca 177  Q
     |||||||||    
T  32150354 cttaaacaca 32150345  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 19594242 - 19594295
Alignment:
Q  219 tgaataatatatcttgaaataatatatctgtatgtgtatgtgtaaatcagttga 272  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  19594242 tgaatgatatatcttgaaataatatctttgtatgtgtatgtgtaaatcagttga 19594295  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 19557789 - 19557847
Alignment:
Q  78 attgtgcttcttggcagaagaataaatggagaacttgaaagtatgtggccaagctcaat 136  Q
    |||||| ||||  |||||||||||| ||||||| |||||||||||||||||||||||||    
T  19557789 attgtgattctcagcagaagaataagtggagaaattgaaagtatgtggccaagctcaat 19557847  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 19557908 - 19557951
Alignment:
Q  184 tgtgttttcgtcttgtatcaatgagcattttcctttgaataata 227  Q
    |||||||||||||||||||| ||||||||||||||| |||||||    
T  19557908 tgtgttttcgtcttgtatcattgagcattttcctttaaataata 19557951  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 19654195 - 19654248
Alignment:
Q  90 ggcagaagaataaatggagaacttgaaagta-tgtggccaagctcaatgtgaaa 142  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||||||||    
T  19654195 ggcataagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaa 19654248  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 19557739 - 19557790
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatatatgtttgaaacatatat 62  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||    
T  19557739 ataagaaacatcttcctccaaagttttta-ttatatatgtttgaagcatatat 19557790  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 19604371 - 19604419
Alignment:
Q  95 aagaataaatggagaacttgaaagta-tgtggccaagctcaatgtgaaa 142  Q
    |||||||| || |||||||||||||| ||||||||||||||||||||||    
T  19604371 aagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaa 19604419  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 18478903 - 18478868
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatat 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18478903 ataagaaacatcttcctccaaagcttttatttatat 18478868  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 19564004 - 19564059
Alignment:
Q  113 tgaaagta-tgtggccaagctcaatgtgaaatcaagaaagagatggacttgtgcaa 167  Q
    |||||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||    
T  19564004 tgaaagtagtgtggccaagctcaatatgaaataaagaaagagatagacttatgcaa 19564059  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 19617954 - 19618000
Alignment:
Q  57 atatatatcaagtatgtatacattgtgcttcttggcagaagaataaa 103  Q
    |||||||||||||||||| |||||||| ||||||  |||||||||||    
T  19617954 atatatatcaagtatgtacacattgtgattcttgaaagaagaataaa 19618000  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 32150287 - 32150242
Alignment:
Q  184 tgtgttttcgtcttgtatcaatgagcattttcctttgaataatata 229  Q
    ||||||||| |||||||||| ||| ||||||||||| |||||||||    
T  32150287 tgtgttttcttcttgtatcattgaacattttcctttaaataatata 32150242  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 18025656 - 18025716
Alignment:
Q  10 ataagaaacattttcctccaaagcttttatttatatatgtttgaaacatatatatcaagtatgtat 75  Q
    ||||||||||| ||||||||||     |||||||||||||||||| ||||||||||||||||||||    
T  18025656 ataagaaacatcttcctccaaa-----tatttatatatgtttgaagcatatatatcaagtatgtat 18025716  T

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