View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18718_low_1 (Length: 732)

Name: NF18718_low_1
Description: NF18718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18718_low_1
NF18718_low_1
[»] chr4 (16 HSPs)
chr4 (10-455)||(45363588-45364020)
chr4 (10-455)||(45382407-45382839)
chr4 (10-355)||(45374923-45375260)
chr4 (253-455)||(45354109-45354298)
chr4 (253-455)||(45356670-45356859)
chr4 (253-455)||(45370411-45370600)
chr4 (621-708)||(45353943-45354030)
chr4 (621-708)||(45356504-45356591)
chr4 (621-708)||(45363422-45363509)
chr4 (621-708)||(45370245-45370332)
chr4 (621-708)||(45382241-45382328)
chr4 (10-97)||(45342044-45342136)
chr4 (572-711)||(45388919-45389057)
chr4 (520-567)||(48872906-48872953)
chr4 (520-567)||(48878210-48878257)
chr4 (518-567)||(48865845-48865894)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 455
Target Start/End: Complemental strand, 45364020 - 45363588
Alignment:
Q  10 attatactcccgtgcttggcttctgttatgactggaaatgattatgtggcgcaatcaattcaagcacctaatacagttagcaatcatggcaagtgaatct 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45364020 attatactcccgtgcttggcttctgttatgattggaaatgattatgtggtgcaatcaattcaagcacctaatacagttagcaatcatggcaagtgaagct 45363921  T
Q  110 gaaatcatggtctcgaggaggagtcatgcagagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatacta 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45363920 gaaatcatggtctggaggaggagtcatgcagagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagacta 45363821  T
Q  210 ttgattagaagaacattcctctgccttcttggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||    
T  45363820 ttgattagaagaacattcctctgccttcttggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttag 45363729  T
Q  310 caattaaccattgtactgattgatttacaattctttatcagaattgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatca 409  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     ||||||  ||||||||||||||||||||||||||||||    
T  45363728 caattaaccatcgtactgattgatttacaattctttatcagaattgtattagcaatt-----tcagttataatctcattatactgttctattgaatatca 45363634  T
Q  410 attgaggatttcttgcatttctctacctgcaaatccttgcagcttc 455  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  45363633 attgaggatttcttgcatttctctacctgcaaatccttacagcttc 45363588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 455
Target Start/End: Complemental strand, 45382839 - 45382407
Alignment:
Q  10 attatactcccgtgcttggcttctgttatgactggaaatgattatgtggcgcaatcaattcaagcacctaatacagttagcaatcatggcaagtgaatct 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45382839 attatactcccgtgcttggcttctgttatgattggaaatgattatgtggtgcaatcaattcaagcacctaatacagttagcaatcatggcaagtgaagct 45382740  T
Q  110 gaaatcatggtctcgaggaggagtcatgcagagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatacta 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45382739 gaaatcatggtctggaggaggagtcatgcagagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagacta 45382640  T
Q  210 ttgattagaagaacattcctctgccttcttggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||    
T  45382639 ttgattagaagaacattcctctgccttcttggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttag 45382548  T
Q  310 caattaaccattgtactgattgatttacaattctttatcagaattgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatca 409  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     ||||||  ||||||||||||||||||||||||||||||    
T  45382547 caattaaccatcgtactgattgatttacaattctttatcagaattgtattagcaatt-----tcagttataatctcattatactgttctattgaatatca 45382453  T
Q  410 attgaggatttcttgcatttctctacctgcaaatccttgcagcttc 455  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  45382452 attgaggatttcttgcatttctctacctgcaaatccttacagcttc 45382407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 45375260 - 45374923
Alignment:
Q  10 attatactcccgtgcttggcttctgttatgactggaaatgattatgtggcgcaatcaattcaagcacctaatacagttagcaatcatggcaagtgaatct 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45375260 attatactcccgtgcttggcttctgttatgattggaaatgattatgtggtgcaatcaattcaagcacctaatacagttagcaatcatggcaagtgaagct 45375161  T
Q  110 gaaatcatggtctcgaggaggagtcatgcagagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggatacta 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45375160 gaaatcatggtctggaggaggagtcatgcagagatgaactctaatataattagtgaggaattgtatttaagggaagttttagtaatgattggggagacta 45375061  T
Q  210 ttgattagaagaacattcctctgccttcttggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||    
T  45375060 ttgattagaagaacattcctctgccttcttggaattatgtcccttctctcctgtttctgttattctctcttgttaggctttgagc--------tttttag 45374969  T
Q  310 caattaaccattgtactgattgatttacaattctttatcagaattg 355  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  45374968 caattaaccatcgtactgattgatttacaattctttatcagaattg 45374923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 253 - 455
Target Start/End: Complemental strand, 45354298 - 45354109
Alignment:
Q  253 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45354298 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45354207  T
Q  353 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 452  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45354206 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45354112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 253 - 455
Target Start/End: Complemental strand, 45356859 - 45356670
Alignment:
Q  253 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45356859 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45356768  T
Q  353 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 452  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45356767 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45356673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 253 - 455
Target Start/End: Complemental strand, 45370600 - 45370411
Alignment:
Q  253 ttctctcctgtttctgttattctctcttgttaggctttgaccttttcccttttttagcaattaaccattgtactgattgatttacaattctttatcagaa 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||| |||||||||||||||||||||||||||||||    
T  45370600 ttctctcctgtttctgttattctctcttgttaggctttgagctttt--------tagcaattaaccatcgtactgattgatttacaattctttatcagaa 45370509  T
Q  353 ttgtattagcaatttcagatcagttgcaatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttgcagc 452  Q
    ||||||||||||||||||     ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45370508 ttgtattagcaatttcag-----ttataatctcattatactgttctattgaatatcaattgaggatttcttgcatttctctacctgcaaatccttacagc 45370414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 621 - 708
Target Start/End: Complemental strand, 45354030 - 45353943
Alignment:
Q  621 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45354030 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 45353943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 621 - 708
Target Start/End: Complemental strand, 45356591 - 45356504
Alignment:
Q  621 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45356591 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 45356504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 621 - 708
Target Start/End: Complemental strand, 45363509 - 45363422
Alignment:
Q  621 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45363509 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 45363422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 621 - 708
Target Start/End: Complemental strand, 45370332 - 45370245
Alignment:
Q  621 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45370332 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 45370245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 621 - 708
Target Start/End: Complemental strand, 45382328 - 45382241
Alignment:
Q  621 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382328 acaccaagttcaaaccttcacccatagcacctggtggattatatcaaaaggaatggtttgataagcttattcgggtttcaggctcagg 45382241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 45342136 - 45342044
Alignment:
Q  10 attatactcccgtgcttggcttctgttatg-----actggaaatgattatgtggcgcaatcaattcaagcacctaatacagttagcaatcatg 97  Q
    ||||||||||||||||||||||||||| ||     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45342136 attatactcccgtgcttggcttctgttgtgttgtgaccggaaatgattatgtggcgcaatcaattcaagcacctaatacagttagcaatcatg 45342044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 572 - 711
Target Start/End: Original strand, 45388919 - 45389057
Alignment:
Q  572 ggaaaaacttcataaagcttaaacaaaaatttacacacactataaaagaacaccaagttcaaaccttcacccatagcacctggtggattatatcaaaagg 671  Q
    ||||| |||| || |||||||||||||| |||| ||| |||||| ||| |||||||||||||||| ||||  |||||||| || || || ||||||||||    
T  45388919 ggaaagacttgatcaagcttaaacaaaa-tttaaacaaactatacaagtacaccaagttcaaaccatcacttatagcaccaggaggtttctatcaaaagg 45389017  T
Q  672 aatggtttgataagcttattcgggtttcaggctcaggcgt 711  Q
    ||||||||||||||||| ||  |||||||||| |||||||    
T  45389018 aatggtttgataagcttcttgaggtttcaggcacaggcgt 45389057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 567
Target Start/End: Original strand, 48872906 - 48872953
Alignment:
Q  520 gtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 567  Q
    ||||| ||||||| ||||| ||| ||||||||||||||||||||||||    
T  48872906 gtgtgttcctcctctggtgcattttttcatgaaattgtaaaatgtcaa 48872953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 567
Target Start/End: Original strand, 48878210 - 48878257
Alignment:
Q  520 gtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 567  Q
    ||||| ||||||| ||||| ||| ||||||||||||||||||||||||    
T  48878210 gtgtgttcctcctctggtgcattttttcatgaaattgtaaaatgtcaa 48878257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 567
Target Start/End: Original strand, 48865845 - 48865894
Alignment:
Q  518 acgtgtgatcctcctatggtgtattgtttcatgaaattgtaaaatgtcaa 567  Q
    ||||||| |||||||  | || ||||||||||||||||||||||||||||    
T  48865845 acgtgtgttcctccttggatgcattgtttcatgaaattgtaaaatgtcaa 48865894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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