View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18718_low_12 (Length: 235)
Name: NF18718_low_12
Description: NF18718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18718_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 549030 - 549250
Alignment:
| Q |
1 |
atgagtgagtgctccaccactcccaaaagagatgaacaaaacagattttgaaggcttattgttcaaccatgtaatacactctaacttattttctttactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549030 |
atgagtgagtgctccaccactcccaaaagagatgaacaaaacagattttgaaggcttattgttcaaccatgtaatacactctaacttattttctttactt |
549129 |
T |
|
| Q |
101 |
tttgactctatttgaatgatggatcccacagggtaaacacaaatgatatcttgtatagattttattgcatcatgttccaaataagtgaagctattgatga |
200 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549130 |
tttgactctctttgaatgatgggtcccacagggtaaacacaaatgatatcttgtatagattttattgcatcatgttccaaataagtgaagctattgatga |
549229 |
T |
|
| Q |
201 |
tgacaccatctaccaaagaga |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
549230 |
tgacaccatctaccaaagaga |
549250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23423598 - 23423378
Alignment:
| Q |
1 |
atgagtgagtgctccaccactcccaaaagagatgaacaaaacagattttgaaggcttattgttcaaccatgtaatacactctaacttattttctttactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23423598 |
atgagtgagtgctccaccactcccaaaagagatgaacaaaacagattttgaaggcttattgttcaaccatgtaatacactctaacttattttctttactt |
23423499 |
T |
|
| Q |
101 |
tttgactctatttgaatgatggatcccacagggtaaacacaaatgatatcttgtatagattttattgcatcatgttccaaataagtgaagctattgatga |
200 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23423498 |
tttgactctctttgaatgatgggtcccacagggtaaacacaaatgatatcttgtatagattttattgcatcatgttccaaataagtgaagctattgatga |
23423399 |
T |
|
| Q |
201 |
tgacaccatctaccaaagaga |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23423398 |
tgacaccatctaccaaagaga |
23423378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University