View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18718_low_2 (Length: 582)
Name: NF18718_low_2
Description: NF18718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18718_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 13 - 563
Target Start/End: Original strand, 11544206 - 11544756
Alignment:
| Q |
13 |
atactcaacacaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaaatggaagataagatccatacacattatgtgtatagaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
11544206 |
atactcaacacaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccatacacattacgtgtatagaga |
11544305 |
T |
|
| Q |
113 |
tcttgttggcgactataatttatatggagctgaaagctggattaaggagcttcaaagaacgtgtgagagatctttaggctcttatgttgaagcaatacct |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11544306 |
tcttgttgggaactataatttatatggagctgaaagctggattaaggagcttcaaagaatgtgtgagagatctttaggctcttatgttgaagcaatacct |
11544405 |
T |
|
| Q |
213 |
gttgaagaaactataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttagct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11544406 |
gttgaagaaactataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttatct |
11544505 |
T |
|
| Q |
313 |
aaaataattaatattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgtt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544506 |
aaaataattaatattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgtt |
11544605 |
T |
|
| Q |
413 |
ttgtgaaagtttaacaatgcctggtcaattgaaattgaaccatttaactcttgctagcattggtggtgttagagtctcttttcgcagcaccatggacgat |
512 |
Q |
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| T |
11544606 |
ttgtgaaagtttaacaatgcctggtcaattggaattgaaccatttaactcttgctagcattggtggtattagagtctcttttcgcagcaccacggacgat |
11544705 |
T |
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| Q |
513 |
gatacaagccagccaaatggcactattgttactgctgctaccaccctttgg |
563 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11544706 |
gatacaagccagccaaatggcactattgttactgcggctaccaccctttgg |
11544756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 563
Target Start/End: Original strand, 11557627 - 11558172
Alignment:
| Q |
13 |
atactcaacacaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaaatggaagataagatccatacacattatgtgtatagaga |
112 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
11557627 |
atactcaacaaaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccatacacattacgtgtatagaga |
11557726 |
T |
|
| Q |
113 |
tcttgttggcgactataatttatatggagctgaaagctggattaaggagcttcaaagaacgtgtgagagatctttaggctcttatgttgaagcaatacct |
212 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |
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| T |
11557727 |
tcttgttggtgaatataatttatatggagctgaaagctggattaaggagcttcaaagaatgtgcgagagatctttaggctctaatgttgaagcaatacct |
11557826 |
T |
|
| Q |
213 |
gttgaagaaactataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttagct |
312 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557827 |
gttgaagaaactataggaggttaatc-----ttgtcttctaaatttacccttccaaatatctctattcatctattttccttgtaaattttatatttagcg |
11557921 |
T |
|
| Q |
313 |
aaaataattaatattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgtt |
412 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || ||||| |
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| T |
11557922 |
aatttaattaatattatattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtgaagatgtt |
11558021 |
T |
|
| Q |
413 |
ttgtgaaagtttaacaatgcctggtcaattgaaattgaaccatttaactcttgctagcattggtggtgttagagtctcttttcgcagcaccatggacgat |
512 |
Q |
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||||||| | |||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||| |||||| |
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| T |
11558022 |
ttgtgaatgcttaacaatgcctggtcaagtggaattgaaccatttaactcttgatagcattggtggggttagagtctctattcgcgcaaccaccgacgat |
11558121 |
T |
|
| Q |
513 |
gatacaagccagccaaatggcactattgttactgctgctaccaccctttgg |
563 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11558122 |
gatgcaagccagccaaatggcactgttgttactgctgctaccaccctttgg |
11558172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 22823154 - 22823070
Alignment:
| Q |
13 |
atactcaacacaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaaatggaagataagatccatacaca |
97 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22823154 |
atactcaacaaaagatattattacatgttttatggtaggtcacttgggttgaacatgtggaagtggaagataagatccatacaca |
22823070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 22831960 - 22831876
Alignment:
| Q |
13 |
atactcaacacaagatattattacatgttttatgttaggtcacttgggttgaacatgtggaaatggaagataagatccatacaca |
97 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
22831960 |
atactcaacaaaagatattaatacatgttttatgttaggtcactcgggttgaacatgtggaagtggaagataagatccatacaca |
22831876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 349 - 563
Target Start/End: Complemental strand, 12064468 - 12064253
Alignment:
| Q |
349 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattgaaatt |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||| || |||| |
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| T |
12064468 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtcaaaatgttttgtgaatgcttaacaatgcctggtcaagtggaatt |
12064369 |
T |
|
| Q |
449 |
gaaccatttaactcttgctagcattggtggtg-ttagagtctcttttcgcagcaccatggacgatgatacaagccagccaaatggcactattgttactgc |
547 |
Q |
| |
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||||||||||||||||| |||||||||||| | ||||||||||| ||||| |||| ||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
12064368 |
gaaccatttaactcttgatagcattggtggggtttagagtctctcttcgcgataccaccgacaatgatacaagccagccaaatggcactgttgtaactgc |
12064269 |
T |
|
| Q |
548 |
tgctaccaccctttgg |
563 |
Q |
| |
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||||||||| |||||| |
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|
| T |
12064268 |
tgctaccactctttgg |
12064253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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