View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18718_low_3 (Length: 529)
Name: NF18718_low_3
Description: NF18718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18718_low_3 |
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| [»] scaffold0303 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 294 - 499
Target Start/End: Original strand, 28859792 - 28860000
Alignment:
| Q |
294 |
aagctgaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtc |
393 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28859792 |
aagctgaaaaacacggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggcggggaaattggtc |
28859891 |
T |
|
| Q |
394 |
tggaatttggagactcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggg |
490 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28859892 |
tggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgataaaggg |
28859991 |
T |
|
| Q |
491 |
gttcattgt |
499 |
Q |
| |
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||||||||| |
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| T |
28859992 |
gttcattgt |
28860000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 294 - 499
Target Start/End: Original strand, 13199 - 13407
Alignment:
| Q |
294 |
aagctgaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtc |
393 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13199 |
aagctgaaaaacacggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccgggaaattggtc |
13298 |
T |
|
| Q |
394 |
tggaatttggagactcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggg |
490 |
Q |
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| T |
13299 |
tagaatttggagattcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcaatgtgttttgcccacccggattagactacatgataaaggg |
13398 |
T |
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| Q |
491 |
gttcattgt |
499 |
Q |
| |
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||||||||| |
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| T |
13399 |
gttcattgt |
13407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 294 - 499
Target Start/End: Complemental strand, 17753391 - 17753183
Alignment:
| Q |
294 |
aagctgaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtc |
393 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
17753391 |
aagctgaaaaacacggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcacaggccgagaaattggtt |
17753292 |
T |
|
| Q |
394 |
tggaatttggagactcaaagtcccaccaaaagtg---aacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggg |
490 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
17753291 |
tggaatttggagactcaaagtcccaccaaaagtgaaaaacttggtttggcgtatgtgtcgaggtgttttgcccacccagattagaccacatgataaaggg |
17753192 |
T |
|
| Q |
491 |
gttcattgt |
499 |
Q |
| |
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||||||||| |
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| T |
17753191 |
gttcattgt |
17753183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 376 - 499
Target Start/End: Complemental strand, 22738783 - 22738657
Alignment:
| Q |
376 |
caggccaggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaa---cttggtttggcgtatgtgtcgaggtgttttgcccacccggatt |
472 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22738783 |
caggccaggcaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggatt |
22738684 |
T |
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| Q |
473 |
agactacatgatagaggggttcattgt |
499 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
22738683 |
agactacatgataaaggggttcattgt |
22738657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 294 - 499
Target Start/End: Original strand, 18118943 - 18119151
Alignment:
| Q |
294 |
aagctgaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtc |
393 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |
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| T |
18118943 |
aagctgaaaaacacagtcattactcggttcgtagtgcttacctgttatgtgtgaacgaactcattgatgtgtcacatcttcacgggccgggaaattggtc |
18119042 |
T |
|
| Q |
394 |
tggaatttggagactcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggg |
490 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
18119043 |
tggaatttggagacttaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacattataaaggg |
18119142 |
T |
|
| Q |
491 |
gttcattgt |
499 |
Q |
| |
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|||| |||| |
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| T |
18119143 |
gttcgttgt |
18119151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 299 - 499
Target Start/End: Original strand, 10770224 - 10770427
Alignment:
| Q |
299 |
gaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtctggaa |
398 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||| |
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| T |
10770224 |
gaaaaacactgtcattactcggttcgtagtgcttatcggttatgtgtgaacgaactcattgacgtgtcacatcttcgcaggtcgggcaattggtctggaa |
10770323 |
T |
|
| Q |
399 |
tttggagactcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggggttca |
495 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| |
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| T |
10770324 |
tttggagactcaaagttccaccaaaagtgaagaacttggtttggcatatgtgtcgaggtttttcgcccacccggattagactacatgataaaggggttca |
10770423 |
T |
|
| Q |
496 |
ttgt |
499 |
Q |
| |
|
|||| |
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|
| T |
10770424 |
ttgt |
10770427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 40900542 - 40900663
Alignment:
| Q |
32 |
cctatttcctatttcaaacttttgaagcaaggcaaaaatattttgatggaacagagtgcaagatttaaaaaacggtctgttaccgcaaaaatggccgaga |
131 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40900542 |
cctatttcctatttcaaacttttgaagcaaggcaaaaatattttgatggagcagagtgcaagatttaaaaaacggtctgttaccgcaaaaatggccgaga |
40900641 |
T |
|
| Q |
132 |
caaaatagtataggtcgttcct |
153 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40900642 |
caaaatagtataggtcgttcct |
40900663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 450
Target Start/End: Original strand, 27492280 - 27492425
Alignment:
| Q |
308 |
ggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtctggaatttggagac |
407 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||| ||||||||| || | || |||||||| ||||| || ||||||||| ||||||||||| |
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| T |
27492280 |
ggtcattattcggttcgtagtgcttaccgtttatgtgtgagcgaactcatcgacttatcccatcttcgtaggccgggctattggtctgaaatttggagac |
27492379 |
T |
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| Q |
408 |
tcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcg |
450 |
Q |
| |
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| ||||||||||| || || ||||||||||||||| |||||||| |
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| T |
27492380 |
ttaaagtcccacccaaggtgaagaacttggtttggcgaatgtgtcg |
27492425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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