View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18718_low_9 (Length: 251)
Name: NF18718_low_9
Description: NF18718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18718_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 18829598 - 18829375
Alignment:
| Q |
18 |
cattagtgggctttgtttgggtgcagagtagttgtttgttgtgctaacatccgagaacgttgttgtggagaaatcatcgctatcatcgatgctacaaacg |
117 |
Q |
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| T |
18829598 |
cattagtgggctttgtttgggtgcagagtagttgtttgttgtgctaacatccgagaacgtcgtggtggagaaatcatcgctatcatcgatgctacaaacg |
18829499 |
T |
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| Q |
118 |
gcgccatatccttcacctgaagttgtagttgaagaacccttactacttgggtttgtgatcctttgcttaatgaaatttttgggtttttgggttggctttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18829498 |
gcgccatatccttcacctgaagttgtagttgaagaacccttactacttgggtttgtgatcctttgcttaatgaattttttgggtttttgggttggctttg |
18829399 |
T |
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| Q |
218 |
gctcgtgtacttcaattgcctttg |
241 |
Q |
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|||||||||||| |||||| |||| |
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| T |
18829398 |
gctcgtgtacttgaattgcttttg |
18829375 |
T |
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