View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18719_high_10 (Length: 318)

Name: NF18719_high_10
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18719_high_10
NF18719_high_10
[»] chr8 (1 HSPs)
chr8 (1-315)||(11487105-11487419)
[»] chr3 (17 HSPs)
chr3 (1-170)||(10361480-10361649)
chr3 (1-190)||(13853140-13853329)
chr3 (1-78)||(9841171-9841248)
chr3 (3-78)||(10519798-10519873)
chr3 (1-99)||(10530953-10531051)
chr3 (1-133)||(10502840-10502972)
chr3 (1-78)||(9852052-9852129)
chr3 (1-78)||(10263014-10263091)
chr3 (1-78)||(10582924-10583001)
chr3 (1-124)||(11146530-11146653)
chr3 (1-75)||(10129241-10129315)
chr3 (1-78)||(10431720-10431797)
chr3 (1-78)||(10665779-10665856)
chr3 (1-108)||(11244202-11244309)
chr3 (1-39)||(10034355-10034393)
chr3 (1-63)||(10679788-10679850)
chr3 (1-78)||(11779661-11779738)
[»] chr4 (1 HSPs)
chr4 (3-133)||(17850607-17850737)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-75)||(55281-55355)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 11487419 - 11487105
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11487419 gctccacgtttcaggaggaaggaatgataaattctcacaactatgaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgaga 11487320  T
Q  101 gacggaatcttacagagtctcaagtcttgaagaaaattgctgcactgaatcaattttggcacagatgacaacgtgacacacttttcaatcgctatatgct 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11487319 gacggaatcttatagagtctcaagtcttgaagaaaattgctgcactgaatcaattttggcacagatgacaacgtgacacacttttcaatcgctatatgct 11487220  T
Q  201 gcctcattcactgagagtcaccccctagtaaatacagtttggtccttccatcattgatatcaannnnnnngtttgactacaaccaatgcaatgcacatgg 300  Q
    ||||||| ||| ||||||||| ||| |||||| |||||| |||| ||||||||||||||||||         ||||| ||||||||||||| ||| ||||    
T  11487219 gcctcatacacggagagtcactcccaagtaaagacagttcggtcattccatcattgatatcaattttttttattgacgacaaccaatgcaaagcagatgg 11487120  T
Q  301 tgttttcaaaagatg 315  Q
    ||||| |||||||||    
T  11487119 tgtttccaaaagatg 11487105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 10361480 - 10361649
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgaga 100  Q
    |||||||||||||||||| ||||| ||||||||||||||| | | || |  |||||||||||||||||| ||||||||    |  |||||||||||||||    
T  10361480 gctccacgtttcaggaggtaggaaggataaattctcacaattttcaatatgaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgaga 10361579  T
Q  101 gacggaatcttacagagtctcaagtcttgaagaaaattgctgcactgaatcaattttggcacagatgaca 170  Q
    || | ||  |||| ||||| ||||  |  |||| || |||| | | ||||||||||||||||||||||||    
T  10361580 gaagaaagattaccgagtcccaagagtgtaagacaagtgcttctcagaatcaattttggcacagatgaca 10361649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 13853140 - 13853329
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgaga 100  Q
    |||||| ||||||||||||||||||||||||||||||||  | |  |    |||||||||||||| ||| || |||||    |  |||||| ||||||||    
T  13853140 gctccatgtttcaggaggaaggaatgataaattctcacatttttctatttcaagtgattgcaatggagttggcagaccacttgacggaaatacagtgaga 13853239  T
Q  101 gacggaatcttacagagtctcaagtcttgaagaaaattgctgcactgaatcaattttggcacagatgacaacgtgacacacttttcaatc 190  Q
    || ||||| | | ||||| |||||| |||||||||| |||| | |  |||||||||||||| |||||||| | | |||||||||||||||    
T  13853240 gatggaatatcatagagtttcaagtgttgaagaaaagtgcttctcaaaatcaattttggcatagatgacagcataacacacttttcaatc 13853329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9841248 - 9841171
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagacc 78  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  || |  |||||||||||||||||| ||||||||    
T  9841248 gctccacgtttcaggaggtaggaaggataaattctcacaactacgaatatgaagtgattgcaatgaagtgggtagacc 9841171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 10519873 - 10519798
Alignment:
Q  3 tccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagacc 78  Q
    |||||||||||||||||||||| ||||||||||||||||  | || |  |||||||||||||||||| ||||||||    
T  10519873 tccacgtttcaggaggaaggaaggataaattctcacaacattgaatattaagtgattgcaatgaagtgggtagacc 10519798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10531051 - 10530953
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgag 99  Q
    |||||||||||||||||| | ||||| ||| ||||||||| ||| || ||||||||| ||||||||||| |||||||| | | | ||||||| ||||||    
T  10531051 gctccacgtttcaggaggcatgaatgctaacttctcacaattatcaatacaaagtgactgcaatgaagtgggtagaccattcttcggaaatgtagtgag 10530953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 10502972 - 10502840
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgaga 100  Q
    |||||||||||||| |||||| || |||||||||||||| || |||| || |||||| ||||| ||||| |||||||| ||  | |||||  ||||||||    
T  10502972 gctccacgtttcagcaggaagaaaggataaattctcacaccttttaatactaagtgactgcaaagaagtgggtagaccatctttgggaaacacagtgaga 10502873  T
Q  101 gacggaatcttacagagtctcaagtcttgaaga 133  Q
    || ||||| | | |||||  ||||| |||||||    
T  10502872 gatggaatatcatagagttccaagtgttgaaga 10502840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9852129 - 9852052
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagacc 78  Q
    |||||| ||||||||||| ||||| ||||||||||||||| | | || |  |||||||||||||||||| ||||||||    
T  9852129 gctccatgtttcaggaggtaggaaggataaattctcacaattttcaatatcaagtgattgcaatgaagtgggtagacc 9852052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 10263091 - 10263014
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagacc 78  Q
    |||||||||||||||||||||||| ||||||||||||||| |   ||    |||||||||||||||||| ||||||||    
T  10263091 gctccacgtttcaggaggaaggaaggataaattctcacaatttacaatttcaagtgattgcaatgaagtgggtagacc 10263014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 10583001 - 10582924
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagacc 78  Q
    |||||||||||||||||| ||||| ||||||||||||||| | |  | |  |||||||||||||||||| ||||||||    
T  10583001 gctccacgtttcaggaggtaggaaggataaattctcacaattttcgatatgaagtgattgcaatgaagtgggtagacc 10582924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11146530 - 11146653
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgaga 100  Q
    |||||||||||| ||||| | ||||||||| ||||| ||||||| || |  ||||   ||||| ||||| |||||||| ||| | ||||||||||| | |    
T  11146530 gctccacgtttccggaggcatgaatgataacttctcgcaactataaataagaagttcctgcaaagaagtgggtagaccttcccttggaaatgcagttaaa 11146629  T
Q  101 gacggaatcttacagagtctcaag 124  Q
    ||||||||  ||| ||||||||||    
T  11146630 gacggaattctactgagtctcaag 11146653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10129315 - 10129241
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtag 75  Q
    |||||||||||||||||| ||||| ||||||||||||||  | | || |  |||||||||||||||||| |||||    
T  10129315 gctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgcaatgaagtgggtag 10129241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10431720 - 10431797
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagacc 78  Q
    |||||||||||||||||| ||||| ||||||||||||||  | | ||    |||||||||||||||||| ||||||||    
T  10431720 gctccacgtttcaggaggtaggaaggataaattctcacatttttcaatttcaagtgattgcaatgaagtgggtagacc 10431797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 10665856 - 10665779
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagacc 78  Q
    |||||||||||||||||| ||||| |||||||||||||| |    || |  |||||||||||||||||| ||||||||    
T  10665856 gctccacgtttcaggaggtaggaaggataaattctcacaccacaaaatattaagtgattgcaatgaagtgggtagacc 10665779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11244202 - 11244309
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgaga 100  Q
    |||||||||||||||||| ||||||| |||  | |||||| |   || |  ||||| |||||| ||||| |||||||| |  ||||||||||||||||||    
T  11244202 gctccacgtttcaggaggtaggaatgttaagctgtcacaattgcgaatatgaagtgtttgcaaagaagtgggtagaccatttgtaggaaatgcagtgaga 11244301  T
Q  101 gacggaat 108  Q
    || |||||    
T  11244302 gatggaat 11244309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10034393 - 10034355
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcaca 39  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  10034393 gctccacgtttcaggaggtaggaaggataaattctcaca 10034355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10679850 - 10679788
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaa 63  Q
    |||||||||||||||||| | ||||| ||| ||||||||| ||| || ||||||||| |||||    
T  10679850 gctccacgtttcaggaggcatgaatgctaacttctcacaattatcaatacaaagtgactgcaa 10679788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11779661 - 11779738
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagacc 78  Q
    |||||||||||||| ||| || || ||||| |||||||||   |||| |  |||||||||||||||||| ||||||||    
T  11779661 gctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagacc 11779738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 17850607 - 17850737
Alignment:
Q  3 tccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgcagtgagaga 102  Q
    |||||||||||||||| | ||| |||||||||| |||  || ||| |  |||||| |||||||||||  || || | ||||| |||||||||||||||||    
T  17850607 tccacgtttcaggaggcatgaaggataaattcttacacatactaatatgaagtgactgcaatgaagtgagttgaacatccgtcggaaatgcagtgagaga 17850706  T
Q  103 cggaatcttacagagtctcaagtcttgaaga 133  Q
    |||||| | |  |||| |||||| |||||||    
T  17850707 cggaatatcattgagtgtcaagtgttgaaga 17850737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 55281 - 55355
Alignment:
Q  1 gctccacgtttcaggaggaaggaatgataaattctcacaactattaacacaaagtgattgcaatgaagtaggtag 75  Q
    |||||||||||||||||| ||||| ||||||||||||||  | | || |  |||||||||||||||||| |||||    
T  55281 gctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgcaatgaagtgggtag 55355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University