View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18719_high_12 (Length: 296)

Name: NF18719_high_12
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18719_high_12
NF18719_high_12
[»] chr3 (25 HSPs)
chr3 (1-278)||(29031770-29032046)
chr3 (193-278)||(33689173-33689258)
chr3 (193-278)||(30734458-30734543)
chr3 (185-278)||(55223221-55223314)
chr3 (199-278)||(43139765-43139844)
chr3 (192-278)||(41752960-41753046)
chr3 (186-255)||(30734392-30734461)
chr3 (192-276)||(51046131-51046215)
chr3 (199-278)||(47492103-47492182)
chr3 (193-255)||(1801443-1801505)
chr3 (225-278)||(30476530-30476583)
chr3 (184-275)||(18321639-18321730)
chr3 (193-255)||(41753043-41753105)
chr3 (200-278)||(50524706-50524784)
chr3 (225-278)||(1801502-1801555)
chr3 (185-278)||(47677311-47677395)
chr3 (200-276)||(30580814-30580890)
chr3 (193-255)||(45103106-45103168)
chr3 (213-255)||(47492064-47492106)
chr3 (186-276)||(50549965-50550055)
chr3 (202-278)||(39057015-39057089)
chr3 (225-255)||(30476503-30476533)
chr3 (225-255)||(33689255-33689285)
chr3 (194-250)||(7977584-7977640)
chr3 (213-249)||(20286921-20286957)
[»] scaffold0586 (2 HSPs)
scaffold0586 (193-278)||(7103-7187)
scaffold0586 (197-255)||(7048-7106)
[»] chr1 (42 HSPs)
chr1 (192-277)||(37155042-37155127)
chr1 (192-278)||(29179653-29179739)
chr1 (192-278)||(48993973-48994059)
chr1 (193-278)||(9157307-9157392)
chr1 (186-278)||(36290463-36290555)
chr1 (199-278)||(44706840-44706919)
chr1 (192-278)||(5995365-5995451)
chr1 (193-278)||(17127620-17127705)
chr1 (193-272)||(21630039-21630118)
chr1 (193-278)||(1091600-1091685)
chr1 (186-255)||(29371447-29371516)
chr1 (193-278)||(32540804-32540889)
chr1 (225-278)||(46334002-46334055)
chr1 (186-278)||(4608986-4609078)
chr1 (225-276)||(34062238-34062289)
chr1 (193-255)||(17127561-17127623)
chr1 (193-255)||(48993914-48993976)
chr1 (225-278)||(29371397-29371450)
chr1 (192-252)||(46931993-46932053)
chr1 (203-278)||(45728294-45728369)
chr1 (192-278)||(48498411-48498497)
chr1 (225-278)||(741558-741611)
chr1 (202-267)||(28395643-28395708)
chr1 (225-278)||(33219602-33219655)
chr1 (199-255)||(15220890-15220946)
chr1 (203-255)||(32540755-32540807)
chr1 (200-255)||(29179601-29179656)
chr1 (193-248)||(31342260-31342315)
chr1 (193-255)||(5995448-5995510)
chr1 (225-278)||(15220840-15220893)
chr1 (186-222)||(4609099-4609135)
chr1 (183-255)||(49444900-49444972)
chr1 (225-269)||(49444976-49445020)
chr1 (225-276)||(8337909-8337960)
chr1 (228-278)||(38674561-38674609)
chr1 (193-252)||(46932064-46932122)
chr1 (225-276)||(48605005-48605056)
chr1 (181-223)||(9157412-9157454)
chr1 (225-255)||(46333975-46334005)
chr1 (225-255)||(48823914-48823944)
chr1 (225-278)||(5694945-5694998)
chr1 (228-276)||(47303427-47303475)
[»] chr8 (22 HSPs)
chr8 (192-278)||(35441025-35441111)
chr8 (192-278)||(5033157-5033243)
chr8 (192-278)||(8243444-8243530)
chr8 (192-278)||(33841647-33841733)
chr8 (193-278)||(5667094-5667179)
chr8 (185-278)||(34229630-34229723)
chr8 (186-277)||(4958590-4958680)
chr8 (193-278)||(8796419-8796504)
chr8 (192-266)||(2581821-2581895)
chr8 (193-255)||(5033240-5033302)
chr8 (192-276)||(10086753-10086837)
chr8 (193-255)||(33841588-33841650)
chr8 (193-255)||(35440966-35441028)
chr8 (225-278)||(39850984-39851037)
chr8 (225-277)||(6296634-6296686)
chr8 (200-252)||(10086839-10086891)
chr8 (192-255)||(5667176-5667239)
chr8 (196-255)||(8796501-8796560)
chr8 (192-255)||(22649841-22649904)
chr8 (186-269)||(43844534-43844617)
chr8 (192-278)||(45191183-45191269)
chr8 (193-222)||(34229744-34229773)
[»] chr7 (24 HSPs)
chr7 (192-278)||(41018284-41018370)
chr7 (192-276)||(11016865-11016949)
chr7 (192-276)||(45231908-45231992)
chr7 (192-278)||(38975801-38975887)
chr7 (195-278)||(30217510-30217592)
chr7 (192-278)||(34854751-34854837)
chr7 (192-277)||(4290541-4290626)
chr7 (225-278)||(42628324-42628377)
chr7 (214-278)||(22764756-22764820)
chr7 (193-252)||(11016951-11017010)
chr7 (193-251)||(4290628-4290686)
chr7 (193-255)||(42628374-42628436)
chr7 (225-278)||(7671967-7672020)
chr7 (225-278)||(29053370-29053423)
chr7 (199-278)||(27028849-27028928)
chr7 (192-278)||(15027538-15027624)
chr7 (199-261)||(27028731-27028793)
chr7 (192-255)||(48000690-48000753)
chr7 (228-275)||(48000769-48000816)
chr7 (193-252)||(48000819-48000878)
chr7 (200-278)||(41945859-41945937)
chr7 (225-277)||(10419487-10419539)
chr7 (215-255)||(15027621-15027661)
chr7 (199-255)||(38975884-38975940)
[»] chr4 (32 HSPs)
chr4 (192-278)||(51265441-51265527)
chr4 (199-278)||(23444325-23444404)
chr4 (192-278)||(6271698-6271784)
chr4 (193-278)||(26186072-26186155)
chr4 (192-278)||(30861830-30861916)
chr4 (184-278)||(35682154-35682248)
chr4 (199-264)||(3862616-3862681)
chr4 (199-264)||(3871373-3871438)
chr4 (213-278)||(47661859-47661924)
chr4 (193-248)||(30709986-30710041)
chr4 (193-255)||(35682245-35682307)
chr4 (225-278)||(40789208-40789261)
chr4 (199-255)||(47661921-47661977)
chr4 (193-255)||(6271781-6271843)
chr4 (193-255)||(42375089-42375151)
chr4 (188-278)||(47762600-47762690)
chr4 (193-255)||(53954689-53954751)
chr4 (202-255)||(23444275-23444328)
chr4 (225-278)||(42375039-42375092)
chr4 (225-278)||(53954639-53954692)
chr4 (225-278)||(55090052-55090105)
chr4 (200-255)||(44379934-44379989)
chr4 (200-250)||(5048884-5048934)
chr4 (193-255)||(51265524-51265586)
chr4 (228-278)||(52028581-52028631)
chr4 (225-278)||(47404641-47404694)
chr4 (193-245)||(2325069-2325121)
chr4 (183-230)||(25617968-25618015)
chr4 (213-252)||(25818390-25818429)
chr4 (225-255)||(50384134-50384164)
chr4 (225-255)||(52028628-52028658)
chr4 (225-258)||(31430490-31430523)
[»] chr5 (31 HSPs)
chr5 (192-278)||(19655154-19655240)
chr5 (193-278)||(12913800-12913885)
chr5 (192-276)||(291093-291177)
chr5 (183-278)||(16439125-16439220)
chr5 (193-255)||(2953269-2953331)
chr5 (186-276)||(3180118-3180207)
chr5 (192-278)||(19598328-19598414)
chr5 (213-278)||(29699384-29699449)
chr5 (199-253)||(13312267-13312321)
chr5 (193-255)||(16971223-16971285)
chr5 (193-255)||(29699446-29699508)
chr5 (193-258)||(2356348-2356412)
chr5 (225-278)||(3899868-3899921)
chr5 (225-278)||(16971173-16971226)
chr5 (193-255)||(3899918-3899980)
chr5 (193-255)||(19655237-19655299)
chr5 (195-255)||(12913882-12913942)
chr5 (228-274)||(38134433-38134479)
chr5 (179-252)||(291179-291252)
chr5 (225-278)||(28818946-28818999)
chr5 (184-253)||(32485630-32485699)
chr5 (199-258)||(30117831-30117890)
chr5 (193-255)||(2093934-2093996)
chr5 (183-252)||(1638444-1638513)
chr5 (213-250)||(7137748-7137785)
chr5 (225-278)||(16802473-16802526)
chr5 (200-273)||(30117889-30117962)
chr5 (213-249)||(1839988-1840024)
chr5 (225-277)||(26662428-26662480)
chr5 (225-277)||(26934023-26934075)
chr5 (199-255)||(28818996-28819052)
[»] chr2 (29 HSPs)
chr2 (192-278)||(16514420-16514506)
chr2 (192-278)||(29508747-29508833)
chr2 (186-258)||(32545864-32545936)
chr2 (194-255)||(6217222-6217283)
chr2 (186-255)||(14470582-14470651)
chr2 (199-255)||(14229356-14229412)
chr2 (193-255)||(16514503-16514565)
chr2 (184-278)||(24115908-24116002)
chr2 (193-255)||(38933666-38933728)
chr2 (225-278)||(2828613-2828666)
chr2 (225-278)||(2893992-2894045)
chr2 (225-278)||(6217280-6217333)
chr2 (215-276)||(6721970-6722031)
chr2 (225-278)||(14229409-14229461)
chr2 (213-278)||(15011297-15011362)
chr2 (225-278)||(29925626-29925679)
chr2 (225-278)||(38933616-38933669)
chr2 (193-242)||(45213892-45213941)
chr2 (199-255)||(9173060-9173116)
chr2 (226-278)||(14470648-14470700)
chr2 (200-255)||(33018624-33018679)
chr2 (233-278)||(1945462-1945507)
chr2 (193-252)||(6722033-6722092)
chr2 (199-250)||(32545789-32545840)
chr2 (225-255)||(2828663-2828693)
chr2 (225-255)||(15011359-15011389)
chr2 (193-255)||(24115999-24116061)
chr2 (199-255)||(29508693-29508750)
chr2 (225-278)||(37762057-37762110)
[»] scaffold0161 (2 HSPs)
scaffold0161 (192-277)||(27277-27362)
scaffold0161 (193-247)||(27217-27271)
[»] chr6 (15 HSPs)
chr6 (185-278)||(17750892-17750984)
chr6 (193-255)||(17750981-17751043)
chr6 (199-278)||(24587464-24587543)
chr6 (225-276)||(31654334-31654385)
chr6 (199-276)||(551223-551300)
chr6 (202-255)||(12343179-12343232)
chr6 (193-258)||(24618598-24618663)
chr6 (192-255)||(24975748-24975811)
chr6 (225-258)||(10521878-10521911)
chr6 (225-278)||(10521905-10521958)
chr6 (225-278)||(12343129-12343182)
chr6 (213-278)||(13043474-13043539)
chr6 (233-278)||(24618657-24618702)
chr6 (193-223)||(2315406-2315436)
chr6 (199-255)||(13043536-13043592)
[»] scaffold0016 (2 HSPs)
scaffold0016 (193-255)||(49700-49762)
scaffold0016 (225-278)||(49759-49812)
[»] scaffold0180 (1 HSPs)
scaffold0180 (195-255)||(19121-19181)
[»] scaffold0047 (2 HSPs)
scaffold0047 (225-278)||(63786-63839)
scaffold0047 (225-255)||(63836-63866)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 29032046 - 29031770
Alignment:
Q  1 attccagtatatttattggttttatagttgagtacagtccaaaataaagtttgttaggaaacatatttctgtcagatcgatgaaacattttatctaccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29032046 attccagtatatttattggttttatagttgagtacagtccaaaataaagtttgttaggaaacatatttctgtcagatcgatgaaacattttatctaccat 29031947  T
Q  101 ttcgtcgctttgtgtctgtgactgtgggtgggtacccaagt--------cccccatgaaggatcaatgcatgtttagattgggtagataaaatggatagt 192  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||||     
T  29031946 ttcgtcgctttgtgtctgtgactgtgggtgggtacccaagtccccaagtcccccatgaaggatcaatgcatgtttaggttgggtagataaaatggatagc 29031847  T
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||||||         || ||||| |||| |||||||||||||| || ||||| ||||||||||||||||    
T  29031846 acttgtgtgacatagagttaggt---------gatattggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagc 29031770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 33689173 - 33689258
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  33689173 acttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagc 33689258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 30734543 - 30734458
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| ||||| ||| ||||||||||||    
T  30734543 acttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagc 30734458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 55223221 - 55223314
Alignment:
Q  185 tggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||| ||||||||||||||||||||||||||||||  || ||||| |||||||||| | | ||| ||||||||| ||||||||||||||||    
T  55223221 tggatagcacttgtgtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagc 55223314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 43139844 - 43139765
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||| ||||||||||  ||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||    
T  43139844 gtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagc 43139765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 41752960 - 41753046
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||| || ||||| | ||||||||||||||    
T  41752960 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagc 41753046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 30734392 - 30734461
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  30734392 ggatagaacttgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgctt 30734461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 51046215 - 51046131
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||||| ||||||||||||| | ||||||||  |||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  51046215 tacttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaa 51046131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 47492182 - 47492103
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||| ||||||||||   | |||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  47492182 gtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagc 47492103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 1801443 - 1801505
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||    
T  1801443 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 1801505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 30476583 - 30476530
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  30476583 gacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagc 30476530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 18321639 - 18321730
Alignment:
Q  184 atggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcaca 275  Q
    |||||||| ||||| |  |||||||||| ||||| ||||  |||||||| ||||||||||||||||| | || ||||||||||| |||||||    
T  18321639 atggatagcacttgggcaacatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcaca 18321730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 41753105 - 41753043
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| |||||||||||||  |||||||||  |||||||||||||||||||| ||||||||||    
T  41753105 acttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgctt 41753043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 50524706 - 50524784
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||  |||| | ||| ||||||| ||||||| |||||||||||| || ||||| ||||||||||||||||    
T  50524706 tgacatagagttgagtgataatgatgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagc 50524784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 1801555 - 1801502
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  1801555 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 1801502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 47677395 - 47677311
Alignment:
Q  185 tggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||| ||||||||||||||||||| |||||||||||          ||||||||||||||||||| || ||||| ||||||||||||||||    
T  47677395 tggatagcacttgtgtgacatagagttgggtgacattgat---------caatcacaatgtcacaatgtttgtgtttctctctctttcacaagc 47677311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 30580890 - 30580814
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    ||||||||| || |||||||||   |||||||| |||||||||||||||| ||||| ||||| | ||||||||||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaa 30580814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 45103106 - 45103168
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  || ||||  ||||||||||||||||||||||    
T  45103106 acttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgctt 45103168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 47492064 - 47492106
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  47492064 ggtgacattggtgacattggccaatcacaatgtcacaatgctt 47492106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 50549965 - 50550055
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    ||||| |||||| |||| ||| || | ||||| ||||  ||||||| ||||||||||| | ||||||||| ||||| ||||||||||||||    
T  50549965 ggataatacttgagtgatataaagctgggtgatattggtgacattgaccaatcacaatattacaatgcttgtgtttctctctctttcacaa 50550055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 39057089 - 39057015
Alignment:
Q  202 acatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||||  ||||| || |||| |||||||||| |||  | ||| ||||||||||||||||||    
T  39057089 acatagagttaggtgacattggtgacatcggacaatgacaatgtcacgatg--tttgtgtttctctctttcacaagc 39057015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 30476503 - 30476533
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  30476503 gacattggccaatcacaatgtcacaatgctt 30476533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 33689285 - 33689255
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  33689285 gacattggccaatcacaatgtcacaatgctt 33689255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 7977640 - 7977584
Alignment:
Q  194 cttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaa 250  Q
    |||| |||||||||| || | ||||||||| || ||||||||| |||||||||||||    
T  7977640 cttgggtgacatagaatttgatgacattgatgatattggccaaccacaatgtcacaa 7977584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 20286921 - 20286957
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcaca 249  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  20286921 ggtgacattgatgacattggccaaccacaatgtcaca 20286957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 7187 - 7103
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  7187 acttgtgtgacatagagtt-ggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagc 7103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 7048 - 7106
Alignment:
Q  197 gtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||||| ||||||||||  || ||| ||||||||||||||||||||||||    
T  7048 gtgtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgctt 7106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 37155042 - 37155127
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 277  Q
    |||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  37155042 tacttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaag 37155127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 29179739 - 29179653
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  29179739 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 29179653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 48994059 - 48993973
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  ||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||    
T  48994059 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 48993973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 9157307 - 9157392
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||||| ||||||||||   |||||| ||||||||||||||||||||||| ||||| |||||||||| |||||    
T  9157307 acttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagc 9157392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 36290555 - 36290463
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||| ||||||||||||| ||||||||||  | ||||| |||||||||||||||||||  || ||||| ||||||||||||||||    
T  36290555 ggatagtacttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagc 36290463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 44706919 - 44706840
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| | |||||||| ||||| ||||||||||||||||    
T  44706919 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagc 44706840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 5995365 - 5995451
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| | ||||||||   ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  5995365 tacttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 5995451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 17127705 - 17127620
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| |||| ||||||||||||||||||   ||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  17127705 acttgggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagc 17127620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 21630039 - 21630118
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttc 272  Q
    ||||| |||||||| |||| ||||||||||  ||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  21630039 acttgcgtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 1091685 - 1091600
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| ||||||||||||| ||||| ||||  ||| ||| |||||||||||||||||||| || ||||| ||||||||||||||||    
T  1091685 acttgggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagc 1091600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 29371516 - 29371447
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||| ||||||||||||||||| ||||||||||||  || |||| |||||||||||||||||||||||    
T  29371516 ggatagcacttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgctt 29371447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 32540889 - 32540804
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| |||||||||| || | ||||||||  ||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  32540889 acttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagc 32540804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 46334055 - 46334002
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  46334055 gacattgaccaatcacaatgtcacaatgcttgtgtttttctctctttcacaagc 46334002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 4608986 - 4609078
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| |||||||||| || ||||| |||||||| |  ||||||| || ||||||||||||||||| || ||||| ||||||||||||||||    
T  4608986 ggatagcacttgtgtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagc 4609078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 34062238 - 34062289
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  34062238 gacattggccaatcacaatgccacaatgcttatgtttctctctctttcacaa 34062289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 17127561 - 17127623
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||||||||    
T  17127561 acttgtgtgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgctt 17127623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 48993914 - 48993976
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  48993914 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 48993976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 29371397 - 29371450
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  29371397 gacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagc 29371450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 46931993 - 46932053
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||    
T  46931993 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 46932053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 45728294 - 45728369
Alignment:
Q  203 catagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||| ||||| ||||  || |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagc 45728369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 48498411 - 48498497
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| |||||||||   |||||||| |||||| |||  ||||||| || ||||| ||||||||||||||||    
T  48498411 tacttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagc 48498497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 741611 - 741558
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| | |||||||||||||||||||| ||||| ||||||||||||||||    
T  741611 gacattggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagc 741558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 28395643 - 28395708
Alignment:
Q  202 acatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctct 267  Q
    ||||||||||  |||||||||  ||||||| ||||||||||||||||||||||| ||||| |||||    
T  28395643 acatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 33219602 - 33219655
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||  |||||||||||| ||||||||| ||||||||||||||||||||||    
T  33219602 gacattgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagc 33219655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 15220946 - 15220890
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||| ||||||||||  || |||||||||||||||| |||||||||||    
T  15220946 gtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgctt 15220890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 32540755 - 32540807
Alignment:
Q  203 catagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||| ||||||||||  | |||||||||||||||||||||||||||||    
T  32540755 catagagttgggtgacattggtggcattggccaatcacaatgtcacaatgctt 32540807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 29179601 - 29179656
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||| ||||||||||  |||| || |||||||||||||||||||||||    
T  29179601 tgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgctt 29179656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 31342260 - 31342315
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcac 248  Q
    ||||| ||||||||||||| |||||||  || ||||||||||||||||||||||||    
T  31342260 acttgggtgacatagagttgggtgacaccgatgacattggccaatcacaatgtcac 31342315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 5995510 - 5995448
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| | ||||||||  ||||||| |||||||||||| ||||||||||    
T  5995510 acttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgctt 5995448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 15220840 - 15220893
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| ||||||| || ||||||||||| ||||| ||||||||||||||||    
T  15220840 gacattggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagc 15220893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 4609135 - 4609099
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattg 222  Q
    |||||||||||||||||||||||||| ||||||||||    
T  4609135 ggatagtacttgtgtgacatagagttgggtgacattg 4609099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 49444900 - 49444972
Alignment:
Q  183 aatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||| ||||| ||||||||||||| ||||||||||  ||||| |  |||||||||||| |||||||||    
T  49444900 aatgggtagcacttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgctt 49444972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 49445020 - 49444976
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctct 269  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||    
T  49445020 gacattggccaatcacaatgccacaatgcttgtgtttctctctct 49444976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 8337960 - 8337909
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    ||||||| |||||||||||| ||||||| || ||||| ||||||||||||||    
T  8337960 gacattgaccaatcacaatgccacaatgtttgtgtttctctctctttcacaa 8337909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 38674609 - 38674561
Alignment:
Q  228 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||| ||||||||||||||  ||| ||||||||||||||||||    
T  38674609 attggccaatcataatgtcacaatgct--tgtgtttctctctttcacaagc 38674561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 46932122 - 46932064
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    ||||| ||||||||||||| ||||||||||  ||||||| |||||||||||| |||||||    
T  46932122 acttgggtgacatagagtt-ggtgacattggtgacattgaccaatcacaatgccacaatg 46932064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 48605056 - 48605005
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    ||||||||||||| | |||||||||||||||  |||| ||||||||||||||    
T  48605056 gacattggccaattataatgtcacaatgcttgcgtttctctctctttcacaa 48605005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 9157454 - 9157412
Alignment:
Q  181 aaaatggatagtacttgtgtgacatagagttaggtgacattga 223  Q
    ||||||||||| ||||||||||||||||||| | |||||||||    
T  9157454 aaaatggatagcacttgtgtgacatagagttggttgacattga 9157412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 46333975 - 46334005
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  46333975 gacattggccaatcacaatgtcacaatgctt 46334005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 48823914 - 48823944
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  48823914 gacattggccaatcacaatgtcacaatgctt 48823944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 5694998 - 5694945
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| |||| |||||||||||||  || ||||| ||||||||||||||||    
T  5694998 gacattggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagc 5694945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 47303427 - 47303475
Alignment:
Q  228 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||| ||||||||||||||| |||| || ||||| ||||||||||||||    
T  47303427 attgaccaatcacaatgtcataatgtttgtgtttctctctctttcacaa 47303475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 35441111 - 35441025
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  35441111 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 35441025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 5033157 - 5033243
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  ||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||    
T  5033157 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 5033243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 8243530 - 8243444
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  ||| |||| ||||||||||| |||||||||| ||||| ||||||||||||||||    
T  8243530 tacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 8243444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 33841733 - 33841647
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  ||||||| ||||||| |||| |||||||||| ||||| ||||||||||||||||    
T  33841733 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagc 33841647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 5667094 - 5667179
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| ||||||||||||| | ||||||||  |||||||| |||||||||||||||||||||| | ||| ||||||||||||||||    
T  5667094 acttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagc 5667179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 34229630 - 34229723
Alignment:
Q  185 tggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||| ||||||||||||||||||| |||||||||   |||||  | |||||||||||||| ||||||| ||||| ||||||||||||||||    
T  34229630 tggatagcacttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagc 34229723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 4958590 - 4958680
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 277  Q
    |||||| |||||||||||||||| || | ||| ||||| ||||||||||||||||||||||| |||| || ||||| |||||||||||||||    
T  4958590 ggatagcacttgtgtgacatagaatttg-tgatattgatgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaag 4958680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 8796419 - 8796504
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| ||||||||||||||||||| |||   || ||||| |||||||||||||||||||||| ||||| ||| ||||||||||||    
T  8796419 acttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagc 8796504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 2581821 - 2581895
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctc 266  Q
    |||||| |||||||||| || ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||    
T  2581821 tacttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 5033302 - 5033240
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  5033302 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 5033240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 10086753 - 10086837
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||||| |||||||||| || |||||||||   |||||||| |||||||||||||| |||| || ||||| ||||||||||||||    
T  10086753 tacttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaa 10086837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 33841588 - 33841650
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  ||||||| ||||||||| |||||||||||||    
T  33841588 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgctt 33841650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 35440966 - 35441028
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||| ||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  35440966 acttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 35441028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 39850984 - 39851037
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  39850984 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 39851037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 6296634 - 6296686
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 277  Q
    ||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||    
T  6296634 gacattgaccaatcacaatgtcataatgcttgtgtttctctctctttcacaag 6296686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 10086891 - 10086839
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    |||||||||||| ||||||||||  ||||||| ||||||||||||||||||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 10086839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 5667239 - 5667176
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||| ||||||||||||| | ||||||||  ||||||||||||| ||||||||| |||||||    
T  5667239 tacttgggtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgctt 5667176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 8796560 - 8796501
Alignment:
Q  196 tgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||| ||||||| ||||  ||||||| ||||||| |||||||||||||||    
T  8796560 tgtgtgacatagagctaggtgatattggtgacattgaccaatcaaaatgtcacaatgctt 8796501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 22649841 - 22649904
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||| |||||||||||||  |||||||||  ||||||||| |||||||||| ||||||||||    
T  22649841 tacttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatgctt 22649904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 43844617 - 43844534
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctct 269  Q
    |||||| | ||| ||||||||||||| | ||||||||  || ||||  |||||||||||||||||||||| ||||| |||||||    
T  43844617 ggatagcaattgggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctctct 43844534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 45191269 - 45191183
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| | ||| ||||  ||||||| ||||||| ||||| |||||| || ||||| ||||||||||| ||||    
T  45191269 tacttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagc 45191183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 34229773 - 34229744
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattg 222  Q
    ||||||||||||||||||||||||||||||    
T  34229773 acttgtgtgacatagagttaggtgacattg 34229744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 41018370 - 41018284
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||    
T  41018370 tacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagc 41018284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 11016865 - 11016949
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  11016865 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaa 11016949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 45231992 - 45231908
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||||| ||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  45231992 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaa 45231908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 38975801 - 38975887
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||   ||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||    
T  38975801 tacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 38975887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 30217592 - 30217510
Alignment:
Q  195 ttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||| | ||||||||| |||||| |||||||||||| ||| |||| |||||||| ||||||||||||||||    
T  30217592 ttgtgtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagc 30217510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 34854837 - 34854751
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  |||||||| ||||||||||| ||||||| || ||||| | ||||||||||||||    
T  34854837 tacttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagc 34854751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 4290541 - 4290626
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 277  Q
    |||||| ||||||||||||| ||||| ||||  || ||||| ||||||||||| |||||||||  ||||| |||||||||||||||    
T  4290541 tacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaag 4290626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 42628324 - 42628377
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||    
T  42628324 gacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagc 42628377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 22764820 - 22764756
Alignment:
Q  214 gtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||  || ||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  22764820 gtgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagc 22764756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 11017010 - 11016951
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    ||||| ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||    
T  11017010 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 11016951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 4290686 - 4290628
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaat 251  Q
    ||||| |||||||| |||| ||||||||||  |||||||||||||||||||||||||||    
T  4290686 acttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaat 4290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 42628436 - 42628374
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  || ||||||||||||||||||| ||||||||    
T  42628436 acttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgctt 42628374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 7672020 - 7671967
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  7672020 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 7671967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 29053423 - 29053370
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  29053423 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 29053370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 27028928 - 27028849
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||| || |||||  |||  |||||||| ||||||||||||||||||| || ||||| ||||||||||| ||||    
T  27028928 gtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagc 27028849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 15027538 - 15027624
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| || ||||||||||   ||||||||  ||||||| |||||||||||  ||||||| || ||||| ||||||||||||||||    
T  15027538 tacttgggtaacatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagc 15027624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 27028731 - 27028793
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgttt 261  Q
    |||||||| ||||  |||||||||  |||||||| |||||||||||||||||||||| |||||    
T  27028731 gtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgttt 27028793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 48000690 - 48000753
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||| ||||||| ||||| ||||||||||  |||||||  ||||||||||| ||||||||||    
T  48000690 tacttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatgctt 48000753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 48000769 - 48000816
Alignment:
Q  228 attggccaatcacaatgtcacaatgcttatgtttttctctctttcaca 275  Q
    ||||||||||||||||| ||||||| || ||||| |||||||||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctctctttcaca 48000816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 48000878 - 48000819
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    ||||| || |||||||||| ||||||||||  ||||||| |||||||||||| |||||||    
T  48000878 acttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatg 48000819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 41945859 - 41945937
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||| ||  |||||||||| |||||| | |||||| ||||||| |||| ||  |||||| ||||||||||||||    
T  41945859 tgacatagaattgagtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagc 41945937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 10419487 - 10419539
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 277  Q
    |||||||| |||||| ||||| ||||| ||| ||||| |||||||||||||||    
T  10419487 gacattggtcaatcataatgttacaatacttgtgtttctctctctttcacaag 10419539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 15027661 - 15027621
Alignment:
Q  215 tgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgctt 15027621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 38975940 - 38975884
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||||||||||||||  |||||||  |||| | |||| ||||||||||    
T  38975940 gtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatgctt 38975884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 51265441 - 51265527
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  51265441 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 51265527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 23444404 - 23444325
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  23444404 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 23444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 6271698 - 6271784
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||| ||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  6271698 tacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 6271784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 26186155 - 26186072
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| ||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||    
T  26186155 acttgggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgct--tgtgtttctctctttcacaagc 26186072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 30861916 - 30861830
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| | ||| ||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  30861916 tacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 30861830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 35682154 - 35682248
Alignment:
Q  184 atggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||| ||| ||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||| ||| ||| ||||| ||| ||||||||||||    
T  35682154 atgggtagcacttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagc 35682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 3862681 - 3862616
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttc 264  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||    
T  3862681 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttttc 3862616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 3871438 - 3871373
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttc 264  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||    
T  3871438 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttttc 3871373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 47661859 - 47661924
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  47661859 ggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 47661924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 30710041 - 30709986
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcac 248  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  30710041 acttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcac 30709986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 35682307 - 35682245
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||| |||||||||||||||||||||||||  ||||||| || ||||||||||||||||||||    
T  35682307 acttatgtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgctt 35682245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 40789208 - 40789261
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  40789208 gacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagc 40789261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 47661977 - 47661921
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  47661977 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 47661921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 6271843 - 6271781
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| |||||||||||||  |||| ||||  |||||||||||||||||||||||||||||||    
T  6271843 acttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgctt 6271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 42375151 - 42375089
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  |||||||  ||||||||||||||||||||||    
T  42375151 acttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgctt 42375089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 47762600 - 47762690
Alignment:
Q  188 atagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||| ||||||||||| |  |||| |||   ||||||| ||||||||||||| |||||| |||||||| ||||||||||||||||    
T  47762600 atagtatttgggtgacatagagctgagtgatatttgtgacattgaccaatcacaatgttacaatgtttatgtttctctctctttcacaagc 47762690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 53954751 - 53954689
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||| |||||||||||||| ||||||||||  ||||||| ||||| |||||||||||||||||    
T  53954751 acttttgtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgctt 53954689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 23444275 - 23444328
Alignment:
Q  202 acatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  23444275 acatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 23444328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 42375039 - 42375092
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||    
T  42375039 gacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 42375092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 53954639 - 53954692
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||||||    
T  53954639 gacattggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagc 53954692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 55090105 - 55090052
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| |||||||||||||||||||||| ||| | ||||||||||||||||    
T  55090105 gacattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagc 55090052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 44379934 - 44379989
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||  ||||||||| |||||||||||||| | |||||||||||||||    
T  44379934 tgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgctt 44379989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 5048934 - 5048884
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaa 250  Q
    |||||||||||| ||||||||||| |||||||| |||||| ||||||||||    
T  5048934 tgacatagagttgggtgacattgatgacattggtcaatcataatgtcacaa 5048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 51265586 - 51265524
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||| ||||||| ||||||||||  ||||||| ||||||| |||||||||||||||    
T  51265586 acttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgctt 51265524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 52028581 - 52028631
Alignment:
Q  228 attggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||| ||||||||||| || ||||| ||||||||||||||||    
T  52028581 attggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagc 52028631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 47404694 - 47404641
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| ||||||||||| ||||||||||  |||| ||||||||||||||||    
T  47404694 gacattggtcaatcacaatgccacaatgcttgggtttctctctctttcacaagc 47404641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 2325121 - 2325069
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgt 245  Q
    ||||| ||||||||||||| ||||||||||| ||||||| | |||||||||||    
T  2325121 acttgagtgacatagagtttggtgacattgatgacattgacaaatcacaatgt 2325069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 25617968 - 25618015
Alignment:
Q  183 aatggatagtacttgtgtgacatagagttaggtgacattgacgacatt 230  Q
    ||||||||  ||||||||||||||||||| ||||||||||| ||||||    
T  25617968 aatggataacacttgtgtgacatagagttgggtgacattgatgacatt 25618015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 25818390 - 25818429
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  25818390 ggtgacattgatgacattggtcaatcacaatgtcacaatg 25818429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 50384134 - 50384164
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  50384134 gacattggccaatcacaatgtcacaatgctt 50384164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 52028658 - 52028628
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  52028658 gacattggccaatcacaatgtcacaatgctt 52028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 31430490 - 31430523
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatg 258  Q
    ||||||| ||||||||||||||||||||||||||    
T  31430490 gacattgaccaatcacaatgtcacaatgcttatg 31430523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 19655154 - 19655240
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  19655154 tacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 19655240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 12913800 - 12913885
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||| ||||  |||||||||  ||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||    
T  12913800 acttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagc 12913885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 291093 - 291177
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||| | ||| | ||||||||||||    
T  291093 tacttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaa 291177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 16439125 - 16439220
Alignment:
Q  183 aatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||| |||||  ||| |||||||| ||| | ||||  |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  16439125 aatggatagcacttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagc 16439220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 2953331 - 2953269
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  2953331 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgctt 2953269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 3180207 - 3180118
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||||| |||||||| |||||||||| ||| ||||||  |||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
T  3180207 ggatagcacttgtgtcacatagagtt-ggtaacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaa 3180118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 19598328 - 19598414
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||| ||||||  |||||||| ||||||||||  |||||||||| ||||| ||||||||||||||||    
T  19598328 tacttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagc 19598414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 29699384 - 29699449
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  29699384 ggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 29699449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 13312267 - 13312321
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgc 253  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  13312267 gtgacatagagttaggtgacattgatgacattgatcaatcacaatgtcacaatgc 13312321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 16971285 - 16971223
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  16971285 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 16971223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 29699508 - 29699446
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||    
T  29699508 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgctt 29699446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 2356412 - 2356348
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatg 258  Q
    ||||||||||||||||||| | ||||||||  |||||||||||||||| |||||||||||||||||    
T  2356412 acttgtgtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatgcttatg 2356348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 3899868 - 3899921
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  3899868 gacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 3899921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 16971173 - 16971226
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  16971173 gacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 16971226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 3899980 - 3899918
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||| ||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  3899980 acttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 3899918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 19655299 - 19655237
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| |||||||||||||  |||||||||  ||||||| |||||||||||||||||||||||    
T  19655299 acttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgctt 19655237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 12913942 - 12913882
Alignment:
Q  195 ttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||||||| ||||||||||  || ||||| |||||||||||||| |||||||    
T  12913942 ttgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgctt 12913882  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 38134479 - 38134433
Alignment:
Q  228 attggccaatcacaatgtcacaatgcttatgtttttctctctttcac 274  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||    
T  38134479 attggccaatcacaatgtcacaatgcttgtgtttctttctctttcac 38134433  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 291252 - 291179
Alignment:
Q  179 ataaaatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    |||||| || ||| ||||| |||| |||||||| ||||||||||  |||||||  |||||||||||||||||||    
T  291252 ataaaaggggtagcacttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatg 291179  T

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Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 28818946 - 28818999
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| |||||||||||||||||| ||| | ||| ||||||||||||||||    
T  28818946 gacattggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagc 28818999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 32485699 - 32485630
Alignment:
Q  184 atggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgc 253  Q
    |||||||  |||||||||||| |||||| ||||||||||  |||||||  |||||||||| |||||||||    
T  32485699 atggataacacttgtgtgacacagagttgggtgacattggtgacattgatcaatcacaatatcacaatgc 32485630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 30117831 - 30117890
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatg 258  Q
    |||| |||||||| ||||||||||  || |||| |||||||||||||||||||| |||||    
T  30117831 gtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatg 30117890  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 2093934 - 2093996
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||| ||||  |||||||  |||||||||||||| |||||||    
T  2093934 acttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgctt 2093996  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 1638444 - 1638513
Alignment:
Q  183 aatggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    ||||||||| ||||  |||| |||||||| ||||| |||   || |||||||||||||||||||||||||    
T  1638444 aatggatagcacttaggtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaatg 1638513  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 7137785 - 7137748
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcacaa 250  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  7137785 ggtgacattgacgacattggtcaaccacaatgtcacaa 7137748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 16802473 - 16802526
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||||||| |||||  || ||||| ||||||||| ||||||    
T  16802473 gacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagc 16802526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 30117962 - 30117889
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttca 273  Q
    |||||||||||| | ||||||||  || ||||| |||||| |||| |||||||||| ||||| ||||| |||||    
T  30117962 tgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttca 30117889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 1839988 - 1840024
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcaca 249  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  1839988 ggtgacattgatgacattggccaaccacaatgtcaca 1840024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 26662428 - 26662480
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 277  Q
    ||||||| ||||||||||||| ||| ||||| ||||| ||||| |||||||||    
T  26662428 gacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaag 26662480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 26934023 - 26934075
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 277  Q
    ||||||| ||||||||||||| ||| ||||| ||||| ||||| |||||||||    
T  26934023 gacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaag 26934075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 28819052 - 28818996
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||  |||| ||||  |||||||| |||||| |||||||||||||||    
T  28819052 gtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgctt 28818996  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 16514420 - 16514506
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||||| ||| || ||||||| ||||| ||||||||||||||||    
T  16514420 tacttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagc 16514506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 29508833 - 29508747
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| ||||||||||||| ||||| ||||  |||||||||||||||||||| | |||||||| ||||| ||||||||||||||||    
T  29508833 tacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagc 29508747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 32545936 - 32545864
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatg 258  Q
    |||||| ||||| |||||||||||||  |||||||||  ||||||||||||||| ||||||||||||||||||    
T  32545936 ggatagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgcttatg 32545864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 6217222 - 6217283
Alignment:
Q  194 cttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||| ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||    
T  6217222 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 6217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 14470582 - 14470651
Alignment:
Q  186 ggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||| ||||||||||||||||||| ||||||||||  ||||||| |||||||||||||  ||||||||    
T  14470582 ggatagcacttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgctt 14470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 14229356 - 14229412
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  14229356 gtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgctt 14229412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 16514565 - 16514503
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||| ||||  ||||||| |||||||||||||||||||||||    
T  16514565 acttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgctt 16514503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 24115908 - 24116002
Alignment:
Q  184 atggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| |||||||||| ||||||||  || ||||||   |||||||||||||||||||| ||||||| | |||||  | |||||||||||||    
T  24115908 atggatagcacttgtgtgagatagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagc 24116002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 38933728 - 38933666
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||  ||| ||||||||||| |||||||||||||||    
T  38933728 acttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgctt 38933666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 2828613 - 2828666
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  2828613 gacattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagc 2828666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 2893992 - 2894045
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||    
T  2893992 gacattggccaatcacaatctcacaatgcttgtatttctctctctttcacaagc 2894045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 6217333 - 6217280
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  6217333 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 6217280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 6721970 - 6722031
Alignment:
Q  215 tgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    ||||||||  ||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||    
T  6721970 tgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaa 6722031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 14229461 - 14229409
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||    
T  14229461 gacattggc-aatcacaatgtcacaatgcttgtgtttctctctctttcacaagc 14229409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 15011297 - 15011362
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||  || ||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  15011297 ggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 15011362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 29925679 - 29925626
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  29925679 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 29925626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 38933616 - 38933669
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||    
T  38933616 gacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 38933669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 45213941 - 45213892
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaa 242  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  45213941 acttgtgtgacatagagttgggtgacattgatgacattgaccaatcacaa 45213892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 9173116 - 9173060
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||| ||||||||||  || ||||||||||||||||| ||||||||||    
T  9173116 gtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgctt 9173060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 14470700 - 14470648
Alignment:
Q  226 acattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| ||||||||||||||||||||| || ||||| ||||||||||||||||    
T  14470700 acattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagc 14470648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 33018679 - 33018624
Alignment:
Q  200 tgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatgctt 33018624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 1945507 - 1945462
Alignment:
Q  233 ccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||| | |||||||||| |||||||||||||||||||||    
T  1945507 ccaatcacaatattacaatgcttaagtttttctctctttcacaagc 1945462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 6722092 - 6722033
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatg 252  Q
    ||||| ||||||||||||| | |||||||   || |||||||||||||||||||||||||    
T  6722092 acttgggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatg 6722033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 32545789 - 32545840
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaa 250  Q
    ||||||||||||||||||||||||  |||||||| ||| ||| |||||||||    
T  32545789 gtgacatagagttaggtgacattggtgacattggtcaaccacgatgtcacaa 32545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 2828693 - 2828663
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  2828693 gacattggccaatcacaatgtcacaatgctt 2828663  T

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Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 15011389 - 15011359
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  15011389 gacattggccaatcacaatgtcacaatgctt 15011359  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 24116061 - 24115999
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||||||||| |||| ||||   || ||||| ||||||||||||| ||||||||    
T  24116061 acttgtgtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgctt 24115999  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 29508693 - 29508750
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcac-aatgtcacaatgctt 255  Q
    ||||||||||||| ||||||||||  ||||||| |||||||| |||| ||||||||||    
T  29508693 gtgacatagagttgggtgacattggtgacattgaccaatcacaaatgccacaatgctt 29508750  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 37762110 - 37762057
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| || |||||||||| ||||||||||| ||||| | ||||||||||||||    
T  37762110 gacatgggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagc 37762057  T

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Target: scaffold0161 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 27362 - 27277
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaag 277  Q
    |||||| |||| |||||||| ||||||||||  || ||||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  27362 tacttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaag 27277  T

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Target: scaffold0161; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 27217 - 27271
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtca 247  Q
    ||||| ||||||||||||| |||||||||   || ||||||||||||||||||||    
T  27217 acttgggtgacatagagttgggtgacattagtgatattggccaatcacaatgtca 27271  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 17750892 - 17750984
Alignment:
Q  185 tggatagtacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||| ||||||||||||||||||| | ||||||||  |||||||| ||||||||||||||||||| || | ||| ||||||||||||||||    
T  17750892 tggatagcacttgtgtgacatagagtt-gatgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagc 17750984  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 17751043 - 17750981
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||    
T  17751043 acttgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgctt 17750981  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 24587464 - 24587543
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||| |||||||||   |||||||| |||||||||||||||||||||| ||||| || || ||||||||||    
T  24587464 gtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagc 24587543  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 31654334 - 31654385
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  31654334 gacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaa 31654385  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 551300 - 551223
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaa 276  Q
    |||||||||| || | ||| ||||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  551300 gtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaa 551223  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 12343232 - 12343179
Alignment:
Q  202 acatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||| ||||| ||||  |||||||||||||||||||||||||||||||    
T  12343232 acatagagttgggtgagattggtgacattggccaatcacaatgtcacaatgctt 12343179  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 24618598 - 24618663
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgcttatg 258  Q
    ||||| ||||||||||||| ||||||||||  |||||||  |||||||||||||| ||||||||||    
T  24618598 acttgagtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatg 24618663  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 24975748 - 24975811
Alignment:
Q  192 tacttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||| ||||||||||||| | ||||||||  |||||||| ||||||||||| ||||||||||    
T  24975748 tacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgctt 24975811  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 10521878 - 10521911
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatg 258  Q
    ||||||||||||||||||||||||||||||||||    
T  10521878 gacattggccaatcacaatgtcacaatgcttatg 10521911  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 10521958 - 10521905
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||| |||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  10521958 gacattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagc 10521905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 12343129 - 12343182
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||| | ||||||||||| |||||||||| ||||| ||||||||||||||||    
T  12343129 gacattagtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagc 12343182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 13043474 - 13043539
Alignment:
Q  213 ggtgacattgacgacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||| |||| ||| ||||| |||||  ||||||||||||||| ||||| ||||||||||||||||    
T  13043474 ggtgatattggcgatattggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagc 13043539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 24618702 - 24618657
Alignment:
Q  233 ccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  24618702 ccaatcacaatgtcacaatgcttgtgtttctctctctttcataagc 24618657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 2315436 - 2315406
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattga 223  Q
    |||||||||||||||||||||||||||||||    
T  2315436 acttgtgtgacatagagttaggtgacattga 2315406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 13043592 - 13043536
Alignment:
Q  199 gtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||  |||| ||||  ||||||||| ||||||||| |||||||||||    
T  13043592 gtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgctt 13043536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 49700 - 49762
Alignment:
Q  193 acttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  49700 acttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgctt 49762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 49812 - 49759
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||    
T  49812 gacattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagc 49759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 19121 - 19181
Alignment:
Q  195 ttgtgtgacatagagttaggtgacattgacgacattggccaatcacaatgtcacaatgctt 255  Q
    ||||||||||||||||| ||||||||||| || ||||  ||||||||||||||||||||||    
T  19121 ttgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgctt 19181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 63786 - 63839
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgcttatgtttttctctctttcacaagc 278  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  63786 gacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagc 63839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 63866 - 63836
Alignment:
Q  225 gacattggccaatcacaatgtcacaatgctt 255  Q
    |||||||||||||||||||||||||||||||    
T  63866 gacattggccaatcacaatgtcacaatgctt 63836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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