View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_high_13 (Length: 285)
Name: NF18719_high_13
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_high_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 121 - 285
Target Start/End: Original strand, 18220721 - 18220885
Alignment:
| Q |
121 |
agtggaaaactgaactgtgtactgnnnnnnnggttacatctttgaatacaaataaccatttacctatcagcagcccatctatcaatccatatttttggct |
220 |
Q |
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| T |
18220721 |
agtggaaaactgaactgtgtactgaaaaaaaggttacatctttaaatacaaataaccatttacctctcagcagcccatctatcaatccatatttttggct |
18220820 |
T |
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| Q |
221 |
tgtttcttctataaaccacaagttcctgattcttggtgtcattcactgctttctcagacttttta |
285 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18220821 |
tgtttcttctataaaccacaagttcctgcttcttggtgtcattcactgctttctcagacttttta |
18220885 |
T |
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Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 121 - 284
Target Start/End: Original strand, 43012497 - 43012659
Alignment:
| Q |
121 |
agtggaaaactgaactgtgtactgnnnnnnnggttacatctttgaatacaaataaccatttacctatcagcagcccatctatcaatccatatttttggct |
220 |
Q |
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||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| || |||||||| |
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| T |
43012497 |
agtggaaaactgaactgtgtattgaaaaaa-ggttacatctatgaatacaaataaccatttacctctcagcagcccatctataaatccctagttttggct |
43012595 |
T |
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| Q |
221 |
tgtttcttctataaaccacaagttcctgattcttggtgtcattcactgctttctcagacttttt |
284 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||| |
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| T |
43012596 |
tgtttctgctataaaccacgagttcctgcttcttggtgtcattcactgctttcttagatttttt |
43012659 |
T |
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