View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_high_17 (Length: 253)
Name: NF18719_high_17
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_high_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 5232973 - 5232813
Alignment:
| Q |
93 |
tgagctgctggaaattgttatccaaacgagattcaaatcatgaatccgagtacacnnnnnnngaatcgtgaatcgaatcttattataaattgtaagatat |
192 |
Q |
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| T |
5232973 |
tgagctgctggaaatcattatccaaacgagattcaaatcatgaatccgagtacactttttctgactggtgaatctaatcttattatgaatcgtaagatat |
5232874 |
T |
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| Q |
193 |
attgtcaataaaaatgttattctaagttgaaaaagcaagtgacataacaaaattataaacc |
253 |
Q |
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| T |
5232873 |
attgtcaataaaaatgttattctaagttgaaaaagcaagtgacataacaaaattataaacc |
5232813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 5233053 - 5233021
Alignment:
| Q |
13 |
aataatattctaggtaaggagctattacataag |
45 |
Q |
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| T |
5233053 |
aataatattctaggtaaggggctattacataag |
5233021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 9836958 - 9837009
Alignment:
| Q |
156 |
aatcgtgaatcgaatcttattataaattgtaagatatattgtcaataaaaat |
207 |
Q |
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| T |
9836958 |
aatcgagaatcaaatcttattataaatcgcaagaaatattgtcaataaaaat |
9837009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 26576438 - 26576476
Alignment:
| Q |
170 |
tcttattataaattgtaagatatattgtcaataaaaatg |
208 |
Q |
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| T |
26576438 |
tcttattatgaattgtaagatacattgtcaataaaaatg |
26576476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 7057683 - 7057646
Alignment:
| Q |
156 |
aatcgtgaatcgaatcttattataaattgtaagatata |
193 |
Q |
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| T |
7057683 |
aatcatgaatcgaatcttattataaattgtaatatata |
7057646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 5912833 - 5912781
Alignment:
| Q |
155 |
gaatcgtgaatcgaatcttattataaattgtaagatatattgtcaataaaaat |
207 |
Q |
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| T |
5912833 |
gaatcgtgaatcgaaacttagcatcaattgtaagatacattgccaataaaaat |
5912781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 19454240 - 19454188
Alignment:
| Q |
155 |
gaatcgtgaatcgaatcttattataaattgtaagatatattgtcaataaaaat |
207 |
Q |
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| T |
19454240 |
gaatcgtgaattgaatcttactatgaattgtaagatacattgccattaaaaat |
19454188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 35578235 - 35578271
Alignment:
| Q |
155 |
gaatcgtgaatcgaatcttattataaattgtaagata |
191 |
Q |
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| T |
35578235 |
gaattgtgaatcgaatcttattataaatcgtaagata |
35578271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 38340363 - 38340403
Alignment:
| Q |
159 |
cgtgaatcgaatcttattataaattgtaagatatattgtca |
199 |
Q |
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| T |
38340363 |
cgtgaatcgaatcttattatgaagtgtaagatacattgtca |
38340403 |
T |
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