View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_high_8 (Length: 376)
Name: NF18719_high_8
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 47407907 - 47407550
Alignment:
| Q |
1 |
tattcaactatggacattagtactaaaaaatctcaggaacattatgttcaagcagtggaaccaactcaattactgccatctagttctaacaccattagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47407907 |
tattcaactatggacattagtactaaaaaatctcaggaacatgatgttcaagcagtggaaccaactcaattactgccatctagttctaacaccatttgtc |
47407808 |
T |
|
| Q |
101 |
aagaaactgaaaaccccccagttcacacacaaggcttttataatcagcaacaacaacatatacattttccatcgccatatgaaattagtggtggcaactt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47407807 |
aagaaactgaaaacaccccagttcacacacaaggcttttataatcagcaacaacaacatatacattttccatcgccatatgaaatcagtggtggcaactt |
47407708 |
T |
|
| Q |
201 |
taatccttttttggggaaaatcactggttcattatcatctctaagaccacaacctcaacctctcaattcacacaaaaggagaattccacatcagagcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47407707 |
taatccttttttggggaaaatcactggttcattatcatctctaagaccacaacctcaacctctcaattcacacaaaaggagaattccacatcagagcatt |
47407608 |
T |
|
| Q |
301 |
ggtctcaatcacttgggtgtagaacagcagagtttattcaatgatcctaagagaatgc |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47407607 |
ggtctcaatcacttgggtgtagaacagcagagtttattcaatgatcctaagagaatgc |
47407550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 47421612 - 47421362
Alignment:
| Q |
1 |
tattcaactatggacattagtactaaaaaatctcaggaacattatgttcaagcagtggaaccaactcaattactgccatctagttctaacaccattagtc |
100 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
47421612 |
tattcaactatggacatcagtgctaaaaaatctcaggaacatgatgttcgagtagtggaaccaactcaattactaccatccagttctaacaccattagtc |
47421513 |
T |
|
| Q |
101 |
aagaaactgaaaaccccccagttcacacacaaggcttttataatcagcaacaacaacatatacattttccatcgccatatgaaattagtggtggcaactt |
200 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||| ||||||| |
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| T |
47421512 |
aagaaactgaaaacaccccagtttgcacacaaggcttttataatcagcaacaacaacatattcatttcccattgccatatgaaatcagtggttgcaactt |
47421413 |
T |
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| Q |
201 |
taatccttttttggggaaaatcactggttcattatcatctctaagaccaca |
251 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
47421412 |
taacccttttttggggacaatcactggttcattatcatctctcagaccaca |
47421362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 47419153 - 47418796
Alignment:
| Q |
1 |
tattcaactatggacattagtactaaaaaatctcaggaacattatgttcaagcagtggaaccaactcaattactgccatctagttctaacaccattagtc |
100 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||||||||| |||||| || ||| || ||| |||||||| |||| ||||||| | ||||||| |
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| T |
47419153 |
tattcaactatggacatcagtgctaaaaaacctcaggaacatgatgttcgagtcgtgcaatcaaatcaattaccaacatccagttctattgctattagtc |
47419054 |
T |
|
| Q |
101 |
aagaaactgaaa-accccccagttcacacacaaggcttttataatcagcaacaacaacatatacattttccatcgccatatgaaattagtggtggcaact |
199 |
Q |
| |
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|||||||||||| | || ||| |||||| |||||| || |||| ||||||||||| ||||||||||| |||||| |||||| || |||||||| |||| |
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| T |
47419053 |
aagaaactgaaagatccacca-ttcacatgcaaggccttaataagcagcaacaacagcatatacatttcccatcgacatatggaagcagtggtggtaact |
47418955 |
T |
|
| Q |
200 |
ttaatccttttttggggaaaatcactggttcattatcatctctaagaccacaacctcaacctctcaattcacacaaaaggagaattccacatcagagcat |
299 |
Q |
| |
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| | ||||| |||| ||| |||||||||||||||||||| |||||||||| ||| | || ||| ||||| ||||||||||||| ||| || ||| |
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| T |
47418954 |
acagccatttttccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacat |
47418855 |
T |
|
| Q |
300 |
tggtctcaatcacttgggtgtagaacagcagagtttattcaatgatcctaagagaatgc |
358 |
Q |
| |
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|||||| ||||||||||||||| || ||||||| |||||| ||| ||||| |||||| |
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|
| T |
47418854 |
tggtctaaatcacttgggtgtaatacggcagagtacattcaacgattctaagtgaatgc |
47418796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 47390793 - 47390436
Alignment:
| Q |
1 |
tattcaactatggacattagtactaaaaaatctcaggaacattatgttcaagcagtggaaccaactcaattactgccatctagttctaacaccattagtc |
100 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||||||||| |||||| || |||| || ||| |||||||| |||| ||||||| | |||||| |
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| T |
47390793 |
tattcaactatggacatcagtgctaaaaaacctcaggaacatgatgttcgagtagtgcaatcaaatcaattaccaacatccagttctattgctgttagtc |
47390694 |
T |
|
| Q |
101 |
aagaaactgaaaaccccccagttcacacacaaggcttttataatcagcaacaacaacatatacattttccatcgccatatgaaattagtggtggcaactt |
200 |
Q |
| |
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|||||||||||| | | ||||||| |||||| | |||| ||||||||||| ||||||||||| |||||| |||||| | |||||||| |||| |
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| T |
47390693 |
aagaaactgaaagatctgccgttcacatgcaaggcctaaataagcagcaacaacagcatatacatttcccatcgacatatggaggcagtggtggtaacta |
47390594 |
T |
|
| Q |
201 |
taatccttttttggggaaaatcactggttcattatcatctctaagaccacaacctcaacctctcaattcacacaaaaggagaattccacatcagagcatt |
300 |
Q |
| |
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| | ||||| |||| || |||| |||||| ||||||| | |||||||||||||| |||| ||||||||| |||| ||||||||||| ||||||| |
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| T |
47390593 |
cagccatttttccgggacaaccactagttcatcatcatctttcagaccacaacctcatcctcatgattcacacataaggcaaattccacatccgagcatt |
47390494 |
T |
|
| Q |
301 |
ggtctcaatcacttgggtgtagaacagcagagtttattcaatgatcctaagagaatgc |
358 |
Q |
| |
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||||| |||||||| |||| ||||| ||||||| |||||||||||||||||||||| |
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|
| T |
47390493 |
ggtctaaatcacttaggtgcagaacgtcagagttctttcaatgatcctaagagaatgc |
47390436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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