View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_high_9 (Length: 357)
Name: NF18719_high_9
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_high_9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 2133836 - 2134192
Alignment:
| Q |
1 |
aaagttctggagaaaagtcgtcaccgcaactgcttatattctaaacaaatgtattaccgagaagctaaaattaaaggtacccgaggaagcatagagtgga |
100 |
Q |
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| T |
2133836 |
aaagttctggagaaaagtcgtcaccgcaactgcttatattctaaacaaatgtattaccgagaagctaaaattaaaggtacccgaggaagcatagagtgga |
2133935 |
T |
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| Q |
101 |
agaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagataaaagtgaaagcatgg |
200 |
Q |
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| T |
2133936 |
agaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagataaaagtgaaagcatgg |
2134035 |
T |
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| Q |
201 |
agctcatatggtatcattcaactggtgtctatatgttgtatataaggctagtcataccattgaaagaaattggagtagaaaccaactcttgcaagtaaaa |
300 |
Q |
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| T |
2134036 |
agctcatatggtatcattcaactggtgtctatatgttgtatataaggctagtcataccattgaaagaaattggagtagaaaccaactcttgcaagtaaaa |
2134135 |
T |
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| Q |
301 |
tgcccattgaaattaggcttgtgataccatagctggttgttcctaataatgtgtttt |
357 |
Q |
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| T |
2134136 |
tgcccattgaaattaggcttgtgataccatagctggttattcctaataatgtgtttt |
2134192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 2073286 - 2073184
Alignment:
| Q |
255 |
taccattgaaagaaattggagtagaaaccaactcttgcaagtaaaatgcccattgaaattaggcttgtgataccatagctggttgttcctaataatgtgt |
354 |
Q |
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| T |
2073286 |
taccattgaaagtaattggagtagaaaccaactcttgtaagtaaaatgtccattgaaattaggattgtgataccatagctggttgttcctaataatgtgt |
2073187 |
T |
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| Q |
355 |
ttt |
357 |
Q |
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| T |
2073186 |
ttt |
2073184 |
T |
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