View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_low_1 (Length: 826)
Name: NF18719_low_1
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_low_1 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 19 - 814
Target Start/End: Original strand, 122683 - 123476
Alignment:
| Q |
19 |
atgacggatatagtaaaacaaagacatttgataaacttacagttgggatgaccgataagatgtccagctgagaaagagtggtataatctggcatttggga |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
122683 |
atgactgatatagtaaaacaaagacatttgataaacttacagttgggatgaccgataagatgtccagctgagaaagagtggtataatctggcatttggga |
122782 |
T |
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| Q |
119 |
caaacctacctgacaaaattcaaattccaaaaatgttgtgttaacaaatattaaatacataagaatacattttatatgatgtaaaagcaaaatatataat |
218 |
Q |
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| T |
122783 |
cgaacctacctgacaaaattcaaattccaaaaatgttgtgttaacaaatattaaatatgtaagaatacattttatatgatgtaaa-gcaaaatatataat |
122881 |
T |
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| Q |
219 |
ttacctcgcctgtaccaacattctgaatagggagagcttgatccttctnnnnnnnnnttaaaagattgtcttagtaacatatttagaattggtatgttga |
318 |
Q |
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| T |
122882 |
ttacctcgcctgtaccaacattctgaatagggagagcttgatccttctaaaaaaaa-ttaaaagattgtcttagtaacatatttagaattggtatgttga |
122980 |
T |
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| Q |
319 |
caaatgtttgttgcaacatggatgtatgactcattgtaaaaggaatactttccagtacctctgctatttcaacattctcaataggcacattttgatcggt |
418 |
Q |
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| T |
122981 |
caaatgtttgttgtaacatagatgtatgactcattgtaaaaggaatactttccagtacctctgctatttcaacattctcaataggcacattttgatcggt |
123080 |
T |
|
| Q |
419 |
ctaaacataaagtataaacgcgtgttaataatttaaattagaattcttatattcacaaatgtttttgcagcagacatgtaagattgagatgagtttatag |
518 |
Q |
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| T |
123081 |
ctaaacataaagtataaacgcgtgttaataatttaaattagaattcttatattcacaaatgtttttgcaacaaacatgtaagattgagatgagtttgtaa |
123180 |
T |
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| Q |
519 |
cctcattttttaggaacaattctttgatcttttctatcaaaccatcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaac |
618 |
Q |
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| T |
123181 |
cctcattttttgggaacaattctttgatcttttctatcaaaccttcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaac |
123280 |
T |
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| Q |
619 |
tttacaaaccaactttctattttccaatcggtccagaagaattggatattccaaaggatttgtgacaccagcctaattgcaagtgttattccaaaagttg |
718 |
Q |
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| T |
123281 |
tttacaaaccaactttctattttccaattggtccagatgaattggatattccaaaggatttgtgacaccagcctaattgcaagtgttattccaaaagttg |
123380 |
T |
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| Q |
719 |
tggataatagattaagactataatataaaaatcaataaatagaaacctcaatcataaccctttgcagatcagcagctgtagttccaagtaattgat |
814 |
Q |
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| T |
123381 |
tggataataaattaagactataatataaaaatcaataaatagaaacctcaatcataaccctttgcagatcagcagctgtagttccaagcaattgat |
123476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 520 - 700
Target Start/End: Original strand, 23696963 - 23697143
Alignment:
| Q |
520 |
ctcattttttaggaacaattctttgatcttttctatcaaaccatcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaact |
619 |
Q |
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|||||| ||| ||||||||| | ||||||| || |||||||| ||||| ||||||| |||||| ||||||||||||||||||| |||||||||||| ||| |
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| T |
23696963 |
ctcattctttgggaacaattatatgatcttctcaatcaaaccttcatcctccttgattgcttgcactgaacaactgtcccaagttggctgccacttcact |
23697062 |
T |
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| Q |
620 |
ttacaaaccaactttctattttccaatcggtccagaagaattggatattccaaaggatttgtgacaccagcctaattgcaa |
700 |
Q |
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| T |
23697063 |
ttacagacgacatttcttttttccaattagtccagtagtattggatattccaatggatttgtgacaccagcctaaatgcaa |
23697143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 519 - 693
Target Start/End: Original strand, 22077957 - 22078130
Alignment:
| Q |
519 |
cctcattttttaggaacaattctttgatcttttctatcaaaccatcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaac |
618 |
Q |
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||||||||||| |||||||| ||||||||||||| || ||||| ||||||||||||| ||||||||| ||||| |||||||||| ||||||||| ||||| |
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| T |
22077957 |
cctcattttttgggaacaatgctttgatcttttcaattaaaccttcatcttccttgattgcttgaaccgaacagctgtcccaagttggctgccatttaac |
22078056 |
T |
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| Q |
619 |
tttacaaaccaactttctattttccaatcggtccagaagaattggatattccaaaggatttgtgacaccagccta |
693 |
Q |
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|||||||| |||| ||| ||||||||| |||||| | |||| ||||||| ||||||||||||||||||||| |
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| T |
22078057 |
tttacaaataaactctctgttttccaattggtccaagtgtgttgg-tattccagaggatttgtgacaccagccta |
22078130 |
T |
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