View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18719_low_16 (Length: 266)

Name: NF18719_low_16

Description: NF18719

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18719_low_16

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 186; E-Value: 1e-101

Query Start/End: Original strand, 16 - 249

Target Start/End: Original strand, 40773111 - 40773345

Alignment:

Q	16	atgtagtggttcatagtgaagcaactaggcaataaaaagaatagttaaaattaaaactataaaataatcgaagtggctatgnnnnnnn-ctattacttta	114	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|
T	40773111	atgtagtgtttcatagtgaagcaactaggcaataaaaagaatagtttatattaaaactataaaataatcgaagtggctaagttttttttctattacttta	40773210	T

Q	115	gagaagtaatgcagaaactaatatctgcttcattagcagattcaccacagccacaaaatgtagatgttaatacatcatcagtaatgcagaaagtagtatc	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40773211	gagaagtaatgcagaaactaacatctgcttcattagcagattcaccacagccacaaaatgtagatgttaatacatcatcagtaatgcagaaagtagtatc	40773310	T

Q	215	tactataggatcagaacaaactgctgccacaaaat	249	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40773311	tactataggatcagaacaaactgctgccacaaaat	40773345	T

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Target: chr4; HSP #2

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 121 - 180

Target Start/End: Original strand, 40780619 - 40780677

Alignment:

Q	121	taatgcagaaactaatatctgcttcattagcagattcaccacagccacaaaatgtagatg	180	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40780619	taatgcacaaactaata-ctacttaattagcagattcactacagccacaaaatgtagatg	40780677	T

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