View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_low_19 (Length: 249)
Name: NF18719_low_19
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 23922708 - 23922495
Alignment:
| Q |
20 |
ggcgcgaagaagaagaagggagtagtaacaagcaatcggctattagtgttgttgatgaggatgaattatcagaaatgtttgataaagctttgcttaacgt |
119 |
Q |
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| T |
23922708 |
ggcgcgaagaagaagaagggagtagtaacaagcaatcggctattagtgttgttgatgaggatgaattatcagaaatgtttgataaagctttgcttaacgt |
23922609 |
T |
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| Q |
120 |
ggaacgtgaatttttgcagaatgagcaaccaccttcatctaacgaaggaaaggttcgtcctaagaaacatgatagcaaaaacaaaacgatagacttaagg |
219 |
Q |
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| T |
23922608 |
ggaacgtgaatttttgcagaatgagcaaccaccttcatctaacgaaggaaaggttcgtcccaagaaacgtgatagcaaaaacaaaacgatagacttaagg |
23922509 |
T |
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| Q |
220 |
aatcttctgcttat |
233 |
Q |
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|||||||||||||| |
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| T |
23922508 |
aatcttctgcttat |
23922495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 23904276 - 23904489
Alignment:
| Q |
20 |
ggcgcgaagaagaagaagggagtagtaacaagcaatcggctattagtgttgttgatgaggatgaattatcagaaatgtttgataaagctttgcttaacgt |
119 |
Q |
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| T |
23904276 |
ggcgcgaagaagaagaagggagtagtaacaagcaatcggctattagtgttgttgatgaggatgaattatcagaaatgtttgataaagctttgcttaatgt |
23904375 |
T |
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| Q |
120 |
ggaacgtgaatttttgcagaatgagcaaccaccttcatctaacgaaggaaaggttcgtcctaagaaacatgatagcaaaaacaaaacgatagacttaagg |
219 |
Q |
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| T |
23904376 |
ggaccgtgaacctttgcagaatgagcaaccaccttcatctaatgaaggaaaggttcgtccgaagaaacgtgatagcaaaaacaaaacgatagacttaagg |
23904475 |
T |
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| Q |
220 |
aatcttctgcttat |
233 |
Q |
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| T |
23904476 |
aatcttctgcttat |
23904489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 23912726 - 23912628
Alignment:
| Q |
26 |
aagaagaagaag---ggagtagtaacaagcaatcggctattagtgttgttgatgaggatgaattatcagaaatgtttgataaagctttgcttaacgtgg |
121 |
Q |
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|||||||||||| |||| |||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||||| |||| |
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| T |
23912726 |
aagaagaagaagcttggagaagtagcaagcaatcagctattagtgctgttgatgaggatgaattatcagagatgtttgataaggttttgcttaatgtgg |
23912628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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