View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18719_low_2 (Length: 768)
Name: NF18719_low_2
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_low_2 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 20 - 756
Target Start/End: Original strand, 122742 - 123476
Alignment:
| Q |
20 |
atgtccagctgagaaagagtggtataatctggcatttgggacaaacctacctgacaaaattcaaattccaaaaatgttgtgttaacaaatattaaataca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
122742 |
atgtccagctgagaaagagtggtataatctggcatttgggacgaacctacctgacaaaattcaaattccaaaaatgttgtgttaacaaatattaaatatg |
122841 |
T |
|
| Q |
120 |
taagaatacattttatatgatgtaaaagcaaaatatataatttacctcgcctgtaccaacattctgaatagggagagcttgatccttctnnnnnnnnntt |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
122842 |
taagaatacattttatatgatgtaaa-gcaaaatatataatttacctcgcctgtaccaacattctgaatagggagagcttgatccttctaaaaaaaa-tt |
122939 |
T |
|
| Q |
220 |
aaaagattgtcttagtaacatatttagaattggtatgttgacaaatgtttgttgcaacatggatgtatgactcattgtaaaaggaatactttccagtacc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
122940 |
aaaagattgtcttagtaacatatttagaattggtatgttgacaaatgtttgttgtaacatagatgtatgactcattgtaaaaggaatactttccagtacc |
123039 |
T |
|
| Q |
320 |
tctgctatttcaacattctcaataggcacattttgatcggtctaaacataaagtataaacgcgtgttaataatttaaattagaattcttatattcacaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123040 |
tctgctatttcaacattctcaataggcacattttgatcggtctaaacataaagtataaacgcgtgttaataatttaaattagaattcttatattcacaaa |
123139 |
T |
|
| Q |
420 |
tgtttttgcagcagacatgtaagattgagatgagtttatagcctcattttttaggaacaattctttgatcttttctatcaaaccatcatcttccttgact |
519 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
123140 |
tgtttttgcaacaaacatgtaagattgagatgagtttgtaacctcattttttgggaacaattctttgatcttttctatcaaaccttcatcttccttgact |
123239 |
T |
|
| Q |
520 |
gcttgaactgaacaactgtcccaagatggctgccacttaactttacaaaccaactttctattttccaatcggtccagaagaattggatattccaaaggat |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
123240 |
gcttgaactgaacaactgtcccaagatggctgccacttaactttacaaaccaactttctattttccaattggtccagatgaattggatattccaaaggat |
123339 |
T |
|
| Q |
620 |
ttgtgacaccagcctaattgcaagtgttattccaaaagttgtggataatagattaagactataatataaaaatcaataaatagaaacctcaatcataacc |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123340 |
ttgtgacaccagcctaattgcaagtgttattccaaaagttgtggataataaattaagactataatataaaaatcaataaatagaaacctcaatcataacc |
123439 |
T |
|
| Q |
720 |
ctttgcagatcagcagctgtagttccaagtaattgat |
756 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
123440 |
ctttgcagatcagcagctgtagttccaagcaattgat |
123476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 462 - 642
Target Start/End: Original strand, 23696963 - 23697143
Alignment:
| Q |
462 |
ctcattttttaggaacaattctttgatcttttctatcaaaccatcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaact |
561 |
Q |
| |
|
|||||| ||| ||||||||| | ||||||| || |||||||| ||||| ||||||| |||||| ||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
23696963 |
ctcattctttgggaacaattatatgatcttctcaatcaaaccttcatcctccttgattgcttgcactgaacaactgtcccaagttggctgccacttcact |
23697062 |
T |
|
| Q |
562 |
ttacaaaccaactttctattttccaatcggtccagaagaattggatattccaaaggatttgtgacaccagcctaattgcaa |
642 |
Q |
| |
|
||||| || | ||||| ||||||||| |||||| || |||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
23697063 |
ttacagacgacatttcttttttccaattagtccagtagtattggatattccaatggatttgtgacaccagcctaaatgcaa |
23697143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 461 - 635
Target Start/End: Original strand, 22077957 - 22078130
Alignment:
| Q |
461 |
cctcattttttaggaacaattctttgatcttttctatcaaaccatcatcttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaac |
560 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| || ||||| ||||||||||||| ||||||||| ||||| |||||||||| ||||||||| ||||| |
|
|
| T |
22077957 |
cctcattttttgggaacaatgctttgatcttttcaattaaaccttcatcttccttgattgcttgaaccgaacagctgtcccaagttggctgccatttaac |
22078056 |
T |
|
| Q |
561 |
tttacaaaccaactttctattttccaatcggtccagaagaattggatattccaaaggatttgtgacaccagccta |
635 |
Q |
| |
|
|||||||| |||| ||| ||||||||| |||||| | |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
22078057 |
tttacaaataaactctctgttttccaattggtccaagtgtgttgg-tattccagaggatttgtgacaccagccta |
22078130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University