View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_low_20 (Length: 235)
Name: NF18719_low_20
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 13711690 - 13711890
Alignment:
| Q |
18 |
atccaaatctccaaattggcagactatatgtatatcaaattatcaaatgaaaacactagatatacgtctaggaattttagatacatatcacatcaattcc |
117 |
Q |
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| T |
13711690 |
atccaaatctccaaattggcagactatatatatatcaaattatcgaatgattacactagctatacgtctaggaattctagatacatatcacatcaattcc |
13711789 |
T |
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| Q |
118 |
aacttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaatggtcataa |
217 |
Q |
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| T |
13711790 |
aacttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccattggttttgggcgaagagtataaaaaatggtcataa |
13711889 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
13711890 |
t |
13711890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 17392832 - 17392735
Alignment:
| Q |
120 |
cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaatggtcataa |
217 |
Q |
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| T |
17392832 |
cttacatgtgggagacattcttggacaggaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatgatgaatggtcataa |
17392735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 17384121 - 17384025
Alignment:
| Q |
120 |
cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaatggtcata |
216 |
Q |
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| T |
17384121 |
cttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatggtcata |
17384025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 19653546 - 19653654
Alignment:
| Q |
109 |
atcaattccaacttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaa |
208 |
Q |
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| T |
19653546 |
atcacttccagcttacacgtgggcgagattgtaggacaggaggataaatcctttgaaaaatgggggctccccgttggtttcaggtcaagagtacggaaaa |
19653645 |
T |
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| Q |
209 |
tggtcataa |
217 |
Q |
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| T |
19653646 |
tggtcataa |
19653654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 15785073 - 15785017
Alignment:
| Q |
109 |
atcaattccaacttacatgtaggagagattgttggacaggaggataaatcatctaaa |
165 |
Q |
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| T |
15785073 |
atcaattccagcttacatgtgggagagatttttggacaggaggataagtcttctaaa |
15785017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 32224314 - 32224376
Alignment:
| Q |
121 |
ttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgtt |
183 |
Q |
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| T |
32224314 |
ttacatgttggagagatccttccacatgaggataaatcatctaaaaattggggactctccgtt |
32224376 |
T |
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