View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18719_low_4 (Length: 470)

Name: NF18719_low_4
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18719_low_4
NF18719_low_4
[»] chr4 (11 HSPs)
chr4 (13-453)||(52982703-52983143)
chr4 (112-453)||(55618926-55619266)
chr4 (112-453)||(55626230-55626570)
chr4 (112-453)||(55657275-55657616)
chr4 (210-452)||(54860799-54861041)
chr4 (195-452)||(3671055-3671312)
chr4 (227-453)||(55663621-55663847)
chr4 (210-400)||(54630329-54630519)
chr4 (202-444)||(55637181-55637423)
chr4 (307-452)||(54630169-54630314)
chr4 (215-425)||(50190005-50190215)
[»] chr2 (1 HSPs)
chr2 (195-453)||(13403579-13403837)
[»] chr8 (3 HSPs)
chr8 (214-453)||(9891470-9891709)
chr8 (279-402)||(17220156-17220279)
chr8 (16-80)||(7737040-7737104)
[»] chr1 (1 HSPs)
chr1 (214-344)||(37308594-37308724)
[»] chr7 (1 HSPs)
chr7 (216-323)||(46153210-46153317)


Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 52982703 - 52983143
Alignment:
Q  13 aatatatctgagaaacccaataatggaaacaacatgtttgcacgattccaccgctcccacgatttttcgcagagatcccagccaagccaaccaactttcg 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52982703 aatatatctgagaaacccaataatggaaacgacatgtttgcacgattccaccgctcccacgatttttcgcagcgatcccagccaagccaaccaactttcg 52982802  T
Q  113 attccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatcttatgtttcagatcacagtcttgtctaccatggcttggaggtag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  52982803 attccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatcttatgtttcagatcacggtcttgtcgaccatggcttggaggtag 52982902  T
Q  213 tgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttcc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52982903 tgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttcc 52983002  T
Q  313 aatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaagac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52983003 aatccctcagcatcctctatcatctgagcatacaaattgacatctctcgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaagac 52983102  T
Q  413 attctaaacagacaataataatttttggatcagggcaaaca 453  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  52983103 attctaaacagacaataataatttttggatcagggcaaaca 52983143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 112 - 453
Target Start/End: Original strand, 55618926 - 55619266
Alignment:
Q  112 gattccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatcttatgtttcagatcacagtcttgtctaccatggcttggaggta 211  Q
    |||||||| | |||||||||| |||||||| |||| ||||||||  |||||||||||||| |||||  ||     ||| |||||||||||| | ||||||    
T  55618926 gattccagtcgtacacgagcacgccaaggggtggcaagactgtagtagcgtacgatcttacgtttcgaattgggatctagtctaccatggcctagaggta 55619025  T
Q  212 gtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttc 311  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||    
T  55619026 gtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgcaagttttcgat-ttttc 55619124  T
Q  312 caatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaaga 411  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  55619125 caatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattctcaaga 55619224  T
Q  412 cattctaaacagacaataataatttttggatcagggcaaaca 453  Q
    |  ||||||||||||  || ||||||||||||||||||||||    
T  55619225 ccatctaaacagacagaaacaatttttggatcagggcaaaca 55619266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 112 - 453
Target Start/End: Original strand, 55626230 - 55626570
Alignment:
Q  112 gattccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatcttatgtttcagatcacagtcttgtctaccatggcttggaggta 211  Q
    |||||||| | |||||||||| |||||||| |||| ||||||||  |||||||||||||| |||||  ||     ||| |||||||||||| | ||||||    
T  55626230 gattccagtcgtacacgagcacgccaaggggtggcaagactgtagtagcgtacgatcttacgtttcgaattgggatctagtctaccatggcctagaggta 55626329  T
Q  212 gtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttc 311  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||    
T  55626330 gtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgcaagttttcgat-ttttc 55626428  T
Q  312 caatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaaga 411  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  55626429 caatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattctcaaga 55626528  T
Q  412 cattctaaacagacaataataatttttggatcagggcaaaca 453  Q
    |  ||||||||||||  || ||||||||||||||||||||||    
T  55626529 ccatctaaacagacagaaacaatttttggatcagggcaaaca 55626570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 112 - 453
Target Start/End: Original strand, 55657275 - 55657616
Alignment:
Q  112 gattccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatcttatgtttcagatcacagtcttgtctaccatggcttggaggta 211  Q
    |||||||| | |||||||||| |||||||| |||| ||||||||  || ||||||||||| |||||| ||     ||| || ||| ||| | | ||||||    
T  55657275 gattccagtcgtacacgagcacgccaaggggtggcaagactgtagtagtgtacgatcttacgtttcaaattgggatctagtttacgatgacctagaggta 55657374  T
Q  212 gtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttc 311  Q
    ||||||||||  |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55657375 gtgtctcatcaacatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcattgttgtcatgactctgcaagttttcgatcttttc 55657474  T
Q  312 caatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaaga 411  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  55657475 caatccctcaacatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattctcaaga 55657574  T
Q  412 cattctaaacagacaataataatttttggatcagggcaaaca 453  Q
    |  ||||||||||||  || ||||||||||||||||||||||    
T  55657575 ccatctaaacagacagaaacaatttttggatcagggcaaaca 55657616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 210 - 452
Target Start/End: Original strand, 54860799 - 54861041
Alignment:
Q  210 tagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttt 309  Q
    ||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||||| |||||| ||| |||||||||    
T  54860799 tagtgtctcgtcttcatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcatagttgtcatgattctgcatgttatcaatcttt 54860898  T
Q  310 tccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaa 409  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  54860899 tccaatccctcagcatcctctatcatctgagcatacaagttgacatctcccgtgttaccaaagcttttctccacttctccaaccttcagaatattctcaa 54860998  T
Q  410 gacattctaaacagacaataataatttttggatcagggcaaac 452  Q
    ||| ||||| ||||||| ||| |||| ||||||||||||||||    
T  54860999 gaccttctagacagacagtaacaattcttggatcagggcaaac 54861041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 195 - 452
Target Start/End: Original strand, 3671055 - 3671312
Alignment:
Q  195 accatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgc 294  Q
    ||||| || ||||||||| |||||| ||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||| ||||||||||||||||    
T  3671055 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcataaatttcatagttgtcatgactctgc 3671154  T
Q  295 aagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaacct 394  Q
    |||||| ||||||||||||||||||| || ||| |||||||| |||||||||| |||||||||||||||| ||      |||||||||||||||||||||    
T  3671155 aagtttccaatcttttccaatccctccgcgtcccctatcatcagagcatacaagttgacatctcccgtgtaaccggggtttttctccgcttctccaacct 3671254  T
Q  395 tcagaatattctcaagacattctaaacagacaataataatttttggatcagggcaaac 452  Q
    |||||| ||||||||||||||  ||||||||| ||| |||||||||||||| ||||||    
T  3671255 tcagaaaattctcaagacattgcaaacagacagtaacaatttttggatcagagcaaac 3671312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 227 - 453
Target Start/End: Original strand, 55663621 - 55663847
Alignment:
Q  227 cttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaatccctcagcatc 326  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||| ||||    
T  55663621 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactctgcaagttttcaatcttttccaatccctcaacatc 55663720  T
Q  327 ctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaagacattctaaacagaca 426  Q
     |||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||    
T  55663721 atctatcatctgagcatacaagttgacatctccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagaca 55663820  T
Q  427 ataataatttttggatcagggcaaaca 453  Q
      || |||| |||||||||||||||||    
T  55663821 gcaacaattgttggatcagggcaaaca 55663847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 210 - 400
Target Start/End: Complemental strand, 54630519 - 54630329
Alignment:
Q  210 tagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttt 309  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||  |||  |||||||| | ||||||||||||||||    
T  54630519 tagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctctgtcttcatgactatccaagttttcaatcttt 54630420  T
Q  310 tccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaa 400  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  54630419 tccaatcccttaacatcctctatcatctgagcatacaaattgacatctcccgtgttaccaaatcttttctctgcttctccaaccttcagaa 54630329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 202 - 444
Target Start/End: Complemental strand, 55637423 - 55637181
Alignment:
Q  202 cttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagtttt 301  Q
    |||||||||| |||||| ||||||||||  ||||||||||| || |||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  55637423 cttggaggtactgtctcgtcttcatctttaaaccaatatgtttcaagaattttaacagccttctcacgaatttcattgttgtcatgactctgcaagtttt 55637324  T
Q  302 caatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaat 401  Q
    |||||| | || | || ||||| ||   |||||||||| ||||||| ||||||||||||||||| | | | ||||| || |||||||||||||||||||     
T  55637323 caatctctacccaaccgtcagcgtcaggtatcatctgaacatacaagttgacatctcccgtgtttccatagcttttatcggcttctccaaccttcagaaa 55637224  T
Q  402 attctcaagacattctaaacagacaataataatttttggatca 444  Q
    ||||||||||| ||||| ||| ||| ||| |||| ||||||||    
T  55637223 attctcaagaccttctagacaaacagtaacaattcttggatca 55637181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 452
Target Start/End: Complemental strand, 54630314 - 54630169
Alignment:
Q  307 ttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattct 406  Q
    ||||||||||||||| |||||| |||| ||||||||||||| ||||||||||| |||||||  |  |||||||| |||||||||||||| |||| |||||    
T  54630314 ttttccaatccctcaacatcctttatcgtctgagcatacaagttgacatctccggtgttacttatgcttttctctgcttctccaacctttagaaaattct 54630215  T
Q  407 caagacattctaaacagacaataataatttttggatcagggcaaac 452  Q
    |||||| ||||| ||| ||| |||  ||| ||||||||||||||||    
T  54630214 caagaccttctagacaaacagtaactattcttggatcagggcaaac 54630169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 215 - 425
Target Start/End: Original strand, 50190005 - 50190215
Alignment:
Q  215 tctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaa 314  Q
    ||||||||||||| | | |||||||||| || |||||| ||||||| |||||||| ||||| | ||| |||||||| |||| |||||| ||||| || ||    
T  50190005 tctcatcttcatcgttcgaccaatatgtttcaagaattttaacagccttctcatatatttcttggttatcatgactttgcaggttttctatcttgtcaaa 50190104  T
Q  315 tccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaagacat 414  Q
    |||||||| | | ||||||||||||  |||||| ||| ||||| | |||||||    ||| |||||  ||||||||||  ||||||||||||| ||||      
T  50190105 tccctcagaaacatctatcatctgaaaatacaagttgtcatcttcagtgttacctcgcctcttctcttcttctccaacagtcagaatattctctagaccc 50190204  T
Q  415 tctaaacagac 425  Q
    |||||||||||    
T  50190205 tctaaacagac 50190215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 195 - 453
Target Start/End: Complemental strand, 13403837 - 13403579
Alignment:
Q  195 accatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgc 294  Q
    ||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  13403837 accatcgcctggtggtagtgtctcgtcttcatcttccaaccaatatgtctcgagaattttaacagccttctcgtaaatttcattgttgtcatgactctgc 13403738  T
Q  295 aagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaacct 394  Q
    | ||| |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||| ||    
T  13403737 aggttctcaatcttttccaatccctccgcctcatctatcatctgagcatacaagttgacatctcccgcgttaccaaagcttttctctgcttctccaatct 13403638  T
Q  395 tcagaatattctcaagacattctaaacagacaataataatttttggatcagggcaaaca 453  Q
    |||||||||||||||||| ||||||||||||  ||| |||| ||||||| |||||||||    
T  13403637 tcagaatattctcaagaccttctaaacagacggtaacaattcttggatcggggcaaaca 13403579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 214 - 453
Target Start/End: Complemental strand, 9891709 - 9891470
Alignment:
Q  214 gtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttcca 313  Q
    |||||| ||||||||||||||||||||||||| |||||| | ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9891709 gtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttcccataaatttcatagttgtcatgactctgcaagttttcaatcttttcca 9891610  T
Q  314 atccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttctccgcttctccaaccttcagaatattctcaagaca 413  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||| |||| ||      ||||| ||||||||||||||||||||| || |||||||||    
T  9891609 atccctcagcgtcctctatcatcagagcatacaagttgacatctcctgtgtaaccggggtttttccccgcttctccaaccttcagaaaatcctcaagaca 9891510  T
Q  414 ttctaaacagacaataataatttttggatcagggcaaaca 453  Q
    || |||||||||| ||| |||||||||||||| |||||||    
T  9891509 ttgtaaacagacagtaacaatttttggatcagagcaaaca 9891470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 279 - 402
Target Start/End: Complemental strand, 17220279 - 17220156
Alignment:
Q  279 gttgtcatgactctgcaagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctcccgtgttacaaaaccttttc 378  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||||    
T  17220279 gttgtcatgattctgcatgttatcaatcttttccaatccctcagcatcttctatcatttgagcatacaagttgacatctcccgtgttaccaaagcttttc 17220180  T
Q  379 tccgcttctccaaccttcagaata 402  Q
    ||||||||||||||||||||||||    
T  17220179 tccgcttctccaaccttcagaata 17220156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 7737040 - 7737104
Alignment:
Q  16 atatctgagaaacccaataatggaaacaacatgtttgcacgattccaccgctcccacgatttttc 80  Q
    |||||||||||||||||||| |||| | |||  ||  || |||||||||||||||||||||||||    
T  7737040 atatctgagaaacccaataaaggaatcgacagattcacatgattccaccgctcccacgatttttc 7737104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 344
Target Start/End: Original strand, 37308594 - 37308724
Alignment:
Q  214 gtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttcca 313  Q
    ||||||||||| || |||||||| |||||||| |||||  | ||||| || |||||||| ||  |||||||||||||||| | ||| ||||| || ||||    
T  37308594 gtctcatcttcttcctccaaccagtatgtctcaagaatcttcacagccttttcataaatctctgtgttgtcatgactctggaggttctcaattttctcca 37308693  T
Q  314 atccctcagcatcctctatcatctgagcata 344  Q
    | ||||||||||| || |||||||| |||||    
T  37308694 acccctcagcatcatcaatcatctgggcata 37308724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 46153210 - 46153317
Alignment:
Q  216 ctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttttccaat 315  Q
    |||||| || || |||||||| ||||||||||||||  | ||||| || |||||||| |||||||||||||||||||| | ||| ||||| || |||||     
T  46153210 ctcatcgtcttcctccaaccagtatgtctcgagaatcttcacagccttttcataaatctcattgttgtcatgactctggaggttctcaattttctccaaa 46153309  T
Q  316 ccctcagc 323  Q
    ||||||||    
T  46153310 ccctcagc 46153317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University