View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_low_5 (Length: 456)
Name: NF18719_low_5
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 55124025 - 55123596
Alignment:
| Q |
13 |
aatatgccaaaaccaaactaatatgagagagaagtaacgaagctcatctcatc-----aattaagcaacaaatataatttgcaggaggtgggtgagtaaa |
107 |
Q |
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| T |
55124025 |
aatatgccaaaaccaaactaatatgaga----agtaacgaagctcatctcatctcatcaattaagcaacaaatataatttgcaggaggtgggtgagtaaa |
55123930 |
T |
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| Q |
108 |
acaaattaaaaaagaaaagaagcagaatggagtctaagagaaggggtacagaattgaaacagggatggagaagaaagagcatggcttctgtttctgcacc |
207 |
Q |
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| T |
55123929 |
acaaattaaaaaagaaaagaaacagaatggagtctaagagaaggggtacagaattgaaacagggatggaaaggaaagagcatggcttctgtttctgcacc |
55123830 |
T |
|
| Q |
208 |
cccattccacttgctcatggtatttggcatcgtcattagcttgttatgtttttctcagtacaaaaacttcaaggctcagttacacaacactgccatcaac |
307 |
Q |
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| T |
55123829 |
cccattccacttgttcatggtatttggcatcgtcattagcttgttatgtttttctcagtacaaaaacttcaaggctcagttacacaacactgccatcaac |
55123730 |
T |
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| Q |
308 |
tttcaattactcatcttcttcttccccttcttgcttatgtttttcattggttcatattctaccggtggaaagctcaactttcacaccctcggagcatgac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55123729 |
tttcaattactcatcttcttcttccccttcttgcttatgtttttcattggttcatattctaccggtggaaagctcaactttcacaccctcggagcatgac |
55123630 |
T |
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| Q |
408 |
aaaatcaccttacccggtcaaccatcttaatctt |
441 |
Q |
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| T |
55123629 |
aaaatcaccttacccggtcaaccatcttaatctt |
55123596 |
T |
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