View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_low_6 (Length: 436)
Name: NF18719_low_6
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_low_6 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 222 - 436
Target Start/End: Complemental strand, 2134515 - 2134301
Alignment:
| Q |
222 |
catatatgtatttcgtaaagggaacataaattttaatacatttttatcttaacttttgtagttggtcaagttgaagaagagcgtttagatgattaaggat |
321 |
Q |
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| T |
2134515 |
catatatgtatttcgtaaagggaacataaattttaatacatttt-atcttaacttttgtagttggtcaagttgaagaagagcgtttagatgattaaggat |
2134417 |
T |
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| Q |
322 |
catcttctcaaactattggcatctacacagcaatttagcatatt-ggggctaaaatgttaaatgttgcttacaattttgtcaatttaaatatgccactac |
420 |
Q |
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| T |
2134416 |
catcttctcaaactattggcatctacacaacaatttagcatattgggggctaaaatgttaaatgttgcttacaattttgtcaatttaaatatgccactac |
2134317 |
T |
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| Q |
421 |
ttgcacacgaccacca |
436 |
Q |
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| T |
2134316 |
ttgcagacgaccacca |
2134301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 2134723 - 2134576
Alignment:
| Q |
18 |
agttccctataggtttcaattaatgtttgattatttgatattgtagtaaatgagagtgatattgacttgtgaccaaaacttctttaaaaccaaaatgtat |
117 |
Q |
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| T |
2134723 |
agttccctataggtttcaattaatgtttgattatttgatattgtagtaaatgagagtgatattgacttgtgaccaaaacttctttaaaaccaaaatgtat |
2134624 |
T |
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| Q |
118 |
atttggtttgtgtttcattttc----tcaatggatatatataattaga |
161 |
Q |
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| T |
2134623 |
atttggtttgtgtttcattttctatttcaatagatatatataattaga |
2134576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 2066185 - 2066254
Alignment:
| Q |
241 |
gggaacataaattttaatacatttttatcttaac-ttttgtagttggtcaagttgaagaagagcgtttag |
309 |
Q |
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| T |
2066185 |
gggagcataaagtttaatgaatttttatcttaaccttttgtagatggtcatgttgaagaagagcgtttag |
2066254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 2083630 - 2083668
Alignment:
| Q |
18 |
agttccctataggtttcaattaatgtttgattatttgat |
56 |
Q |
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| T |
2083630 |
agttccttataggtttcaattaatgtttgattctttgat |
2083668 |
T |
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