View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18719_low_7 (Length: 416)
Name: NF18719_low_7
Description: NF18719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18719_low_7 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 47408289 - 47407886
Alignment:
| Q |
12 |
agagagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaacaacaggt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47408289 |
agagagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggt |
47408190 |
T |
|
| Q |
112 |
aggtagagtatgtggtttatgtagccttacagatgnnnnnnnnnaaggcgattgaatatagatttcaacgttatgctaagaaccattgtttttcttgcag |
211 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47408189 |
aggtagagtatgtggtttatgcagccttacagatgtttttttt-aaggcgattgaatatagatttcaacgttatgctaagaaccattgtttttcttgcag |
47408091 |
T |
|
| Q |
212 |
ataaaatccaatacgggttcttctggacaacagcaccctataagcatgccaactgttacttcaattccagcacaatttaatgatccccatgcaatagtaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47408090 |
ataaaatccaatacgggttcttctggacaacagcaccctataagcatgccaactgttacttcaattccagcacaatttaatgatccccatgcaatagtaa |
47407991 |
T |
|
| Q |
312 |
aactgcatccgagaagtatgaatgctgctgcggaccattctcataataattcttcagtaatccaagtgaagactgggccgccttattcaactatggacat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47407990 |
aactgcatccgagaagtatgaatgctgctgcggaccattctcataataattcttcagtaatccaagtgaagactgggccgacttattcaactatggacat |
47407891 |
T |
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| Q |
412 |
tagta |
416 |
Q |
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||||| |
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| T |
47407890 |
tagta |
47407886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 411
Target Start/End: Complemental strand, 47391019 - 47390777
Alignment:
| Q |
169 |
atagatttcaacgttatgctaagaaccattgtttttcttgcagataaaatccaatacgggttcttctggacaacagcaccctataagcatgccaactgtt |
268 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| |||||||||||||| |||| |||| |||| |||||||||||| |
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| T |
47391019 |
atagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgtt |
47390920 |
T |
|
| Q |
269 |
acttcaattccagcacaatttaatgatccccatgcaatagtaaaactgcatccgagaagtatgaatgctgctgcggaccattctcataataattcttcag |
368 |
Q |
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||||| | | | || ||||||| |||||||||||| ||| | ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
47390919 |
acttccagtggaacaaaatttaacgatccccatgcattagcacaactgcatcagagaagtatgaatgctgctgcagaccattctcataatgcttcttcag |
47390820 |
T |
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| Q |
369 |
taatccaagtgaagactgggccgccttattcaactatggacat |
411 |
Q |
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| T |
47390819 |
ctatccaagtgaagagtgagccaacctattcaactatggacat |
47390777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 47421990 - 47421596
Alignment:
| Q |
12 |
agagagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaacaacaggt |
111 |
Q |
| |
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|||||||||||||| | ||||| || | |||| ||||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||||||||||||| |
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| T |
47421990 |
agagagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggt |
47421891 |
T |
|
| Q |
112 |
aggtagagtatgtggtttatgtagccttacagatgnnnnnnnnnaaggcgattgaatatagatttcaacgttatgctaagaaccattgtttttcttgcag |
211 |
Q |
| |
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||||||| || | ||||| | |||||| ||| |||| | || || ||||||||||||||||||||||||||||| |||||||| || |
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| T |
47421890 |
aggtagaatagatagtttactttatcttaca-atgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttcttaca- |
47421793 |
T |
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| Q |
212 |
ataaaatccaatacgggttcttctggacaacagcaccctataagcatgccaactgttacttcaattccagcacaatttaatgatccccatgcaatagtaa |
311 |
Q |
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||| ||||||| |||||||||||||| |||| |||| |||| ||||||||||||||||| | | | || ||||||||| ||| ||||| ||| | |
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| T |
47421792 |
---aaaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcctgatgcattagcac |
47421696 |
T |
|
| Q |
312 |
aactgcatccgagaagtatgaatgctgctgcggaccattctcataataattcttcagtaatccaagtgaagactgggccgccttattcaactatggacat |
411 |
Q |
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|||| |||| |||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||| || ||| ||||||||||||||||| |
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| T |
47421695 |
aactacatcagagaagtacgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatggacat |
47421596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 169 - 411
Target Start/End: Complemental strand, 47419382 - 47419137
Alignment:
| Q |
169 |
atagatttcaacgttatgctaagaaccattgtttttcttgcagataaaatccaatacgggttcttctgg---acaacagcaccctataagcatgccaact |
265 |
Q |
| |
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|||| |||||||||||||||||||||| | ||||||||| ||| |||| |||| || ||||||||||| ||| |||| |||| |||| || | ||| |
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| T |
47419382 |
ataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttctggtggacagcagccccctgtaaggatttctact |
47419283 |
T |
|
| Q |
266 |
gttacttcaattccagcacaatttaatgatccccatgcaatagtaaaactgcatccgagaagtatgaatgctgctgcggaccattctcataataattctt |
365 |
Q |
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|||||||| | | | || |||||||||||||| ||||| ||| | ||||||||| |||||| |||||| ||||| ||||||||||||||| ||||| |
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| T |
47419282 |
gttacttccagtggaacaaaatttaatgatcccgatgcattagcacaactgcatcagagaagctggaatgcagctgcagaccattctcataatgcttctt |
47419183 |
T |
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| Q |
366 |
cagtaatccaagtgaagactgggccgccttattcaactatggacat |
411 |
Q |
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||| |||||||| |||| || ||| | ||||||||||||||||| |
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| T |
47419182 |
cagctatccaagtaaagagtgagccaacctattcaactatggacat |
47419137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 47391161 - 47391053
Alignment:
| Q |
6 |
ttgtcgagagagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaaca |
105 |
Q |
| |
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||||| |||||||||||||| | ||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| |||||||||| |||||||||| |
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| T |
47391161 |
ttgtctagagagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaaca |
47391062 |
T |
|
| Q |
106 |
acaggtagg |
114 |
Q |
| |
|
||||||||| |
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| T |
47391061 |
acaggtagg |
47391053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 47419518 - 47419412
Alignment:
| Q |
12 |
agagagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaacaacaggt |
111 |
Q |
| |
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||||||||||||| ||||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| ||||||| || |||||||||||||||| |
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| T |
47419518 |
agagagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt |
47419419 |
T |
|
| Q |
112 |
aggtaga |
118 |
Q |
| |
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||||||| |
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| T |
47419418 |
aggtaga |
47419412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 47424722 - 47424616
Alignment:
| Q |
12 |
agagagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaacaacaggt |
111 |
Q |
| |
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||||||||||| | |||||| |||| | |||| ||||| ||||||| ||||||| | | |||||| ||| | |||||||||||||||| |||||||| |
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| T |
47424722 |
agagagatgaagtgtccaaacatcaatttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggt |
47424623 |
T |
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| Q |
112 |
aggtaga |
118 |
Q |
| |
|
| ||||| |
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| T |
47424622 |
acgtaga |
47424616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 46796297 - 46796383
Alignment:
| Q |
328 |
tatgaatgctgctgcggaccattctcataataattcttcagtaatccaagtgaagactgggccgccttattcaactatggacattag |
414 |
Q |
| |
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|||||||| |||| |||||||||||||| || |||||||| | |||||||||| || |||| | ||||||| |||||||||||| |
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| T |
46796297 |
tatgaatgatgctatggaccattctcatattacttcttcagctcttcaagtgaagagtgagccgacctattcaattatggacattag |
46796383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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