View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1871_high_19 (Length: 257)
Name: NF1871_high_19
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_high_19 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 22449267 - 22449520
Alignment:
| Q |
4 |
gaacttaaaccatggttgaaataatctttaacctgagt---------ctttcttttgactaagactttaaaatgattaaattacaccttacattgcatag |
94 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22449267 |
gaactgaaaccatggttgaaataatctttaacctgagttaacaaagtctttcttttgactaacactttaaaatgattaaattacaccttacattgcatag |
22449366 |
T |
|
| Q |
95 |
ccaattgcccattcaaaactaaattaaattatttaccccccactgcacctgagttgacattcaataaagcaacattcaatattaattatgactaagtccc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22449367 |
ccaattgcccattcaaaactaaattaaattatttaccccccactgcacctgagttgacattcaataaagcaacattcaatattaattataactaagtccc |
22449466 |
T |
|
| Q |
195 |
tgaaaaacaatgatttgattatgaaactgataaagctctatcaacttacctatg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22449467 |
tgaaaaacaatgatttgattatgaaactgataaagctctatgaacttacctatg |
22449520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 22437999 - 22437918
Alignment:
| Q |
39 |
agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagccaattgcccattcaaaactaaatta |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22437999 |
agtctttcttttgactaaggctttaaaatggttaaactacacctcacattgcatagccaattgcccattcaaaactaaatta |
22437918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 22449044 - 22449169
Alignment:
| Q |
3 |
tgaacttaaaccatggttgaaataatctttaacctgagt---------ctttcttttgactaagactttaaaatgattaaattacaccttacattgcata |
93 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
22449044 |
tgaacttacaccatggttgaaataatctttaacctgagttaacaaagtctttcttttgaccaagactttaaaatggttaaagtacacctcacattgcata |
22449143 |
T |
|
| Q |
94 |
gccaa-ttgcccattcaaaactaaat |
118 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
22449144 |
gccaatttgcccattcaaaactaaat |
22449169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 22446377 - 22446255
Alignment:
| Q |
1 |
attgaacttaaaccatggttgaaataatctttaacctg-------agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcata |
93 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | ||| ||||||||||| ||| |||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
22446377 |
attgaacttaaaccatggttgaaacaatctttaaccagttaacaaagtttttcttttgaccaagtctttaaaatggttaaactacacctcacattgcata |
22446278 |
T |
|
| Q |
94 |
gccaattgcccattcaaaactaaatta |
120 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
22446277 |
gcc----gcccattcaaaactaaatta |
22446255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 22440084 - 22439951
Alignment:
| Q |
5 |
aacttaaaccatggttgaaataatctttaacctgagt---------ctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagc |
95 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||||||||| | |||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
22440084 |
aacttaaaccatggtggaaacaatctttaacctgagttaacaaagtctttcttttgtccaagactttaaaatggttaaagattacctcacattgcatagc |
22439985 |
T |
|
| Q |
96 |
caattgcccattcaaaactaaattaaattattta |
129 |
Q |
| |
|
|||||| | |||||||||||| |||||||||||| |
|
|
| T |
22439984 |
caattggcgattcaaaactaatttaaattattta |
22439951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22449008 - 22449046
Alignment:
| Q |
1 |
attgaacttaaaccatggttgaaataatctttaacctga |
39 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22449008 |
attgaacttaaaccatggttgaaacaatctttaacctga |
22449046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 22359329 - 22359293
Alignment:
| Q |
5 |
aacttaaaccatggttgaaataatctttaacctgagt |
41 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22359329 |
aacttaaaccatggttgaaacaatctttaacctgagt |
22359293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 22369231 - 22369195
Alignment:
| Q |
5 |
aacttaaaccatggttgaaataatctttaacctgagt |
41 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22369231 |
aacttaaaccatggttgaaacaatctttaacctgagt |
22369195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 28358 - 28416
Alignment:
| Q |
163 |
gcaacattcaatattaattatgactaagtccctgaaaaacaatgatttgattatgaaac |
221 |
Q |
| |
|
|||| ||||||||| |||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
28358 |
gcaatattcaatatcaattatgactgggtacttgaaaaacaatgatttgattatgaaac |
28416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University