View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1871_high_25 (Length: 240)

Name: NF1871_high_25
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1871_high_25
NF1871_high_25
[»] chr4 (8 HSPs)
chr4 (18-196)||(34967191-34967370)
chr4 (18-196)||(27742651-27742829)
chr4 (18-174)||(9117543-9117699)
chr4 (18-174)||(54207336-54207492)
chr4 (203-240)||(27742563-27742600)
chr4 (203-240)||(9117755-9117792)
chr4 (203-240)||(34967421-34967458)
chr4 (203-240)||(54207548-54207585)
[»] chr3 (7 HSPs)
chr3 (18-174)||(46920206-46920362)
chr3 (18-174)||(11031561-11031717)
chr3 (18-174)||(18319704-18319860)
chr3 (20-196)||(52126190-52126376)
chr3 (203-240)||(11031468-11031505)
chr3 (203-240)||(18319916-18319953)
chr3 (203-240)||(46920418-46920455)
[»] chr7 (3 HSPs)
chr7 (18-174)||(16849879-16850035)
chr7 (18-196)||(31738741-31738929)
chr7 (203-240)||(16849786-16849823)
[»] chr1 (3 HSPs)
chr1 (18-174)||(38007099-38007255)
chr1 (18-196)||(51083459-51083647)
chr1 (203-240)||(38007311-38007348)
[»] chr8 (4 HSPs)
chr8 (18-174)||(11465682-11465838)
chr8 (18-174)||(3428579-3428735)
chr8 (203-240)||(3428791-3428828)
chr8 (203-240)||(11465894-11465931)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 34967191 - 34967370
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34967191 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacatttg 34967290  T
Q  118 ccttgctacatgaaaaccccactacc-accatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34967291 ccttgctacatgaaaaccccactaccaaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 34967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 27742829 - 27742651
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27742829 ggaacagattatacccatgaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 27742730  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 196  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  27742729 ccttgctacatgaaaaccccactaccaccatgtattttcaactaccaattaatttctcaatacactgaacgtgttgatt 27742651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 9117543 - 9117699
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9117543 ggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttg 9117642  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9117643 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 9117699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 54207336 - 54207492
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54207336 ggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttg 54207435  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54207436 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 54207492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 27742600 - 27742563
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  27742600 atgtaatccatctattatttctttatgttctttttggt 27742563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 9117755 - 9117792
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  9117755 atgtaattcatctattatttctttatgttctttttggt 9117792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 34967421 - 34967458
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  34967421 atgtaatccatctattatttctttatgttttttttggt 34967458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 54207548 - 54207585
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  54207548 atgtaattcatctattatttctttatgttctttttggt 54207585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 46920206 - 46920362
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920206 ggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 46920305  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920306 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 46920362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 11031717 - 11031561
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11031717 ggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttg 11031618  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11031617 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 11031561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 18319704 - 18319860
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18319704 ggaacaaattatacccaggaaattttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctagaaatgacatttg 18319803  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18319804 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 18319860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 52126376 - 52126190
Alignment:
Q  20 aacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatg-ttttattcctaagaatgacatttgc 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||   |||    
T  52126376 aacaaattatacccaggaaaatttttaacccatgatcttcccatttttattcccatgaaagaggagttggaatgtttttattcctaggaatgactagtgc 52126277  T
Q  119 cttgctacatgaaaacccca---------ctaccaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 196  Q
    |||||||| |||||||||||         |||||||||||||||||||||||||||||||||| || || || ||||||||||||||    
T  52126276 cttgctacttgaaaaccccactatgtctcctaccaccatgttttttcaactgccaattaatttttccatgcaatgaacgtgttgatt 52126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 11031505 - 11031468
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  11031505 atgtaattcatctattatttctttatgttctttttggt 11031468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 18319916 - 18319953
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  18319916 atgtaattcatctattatttctttatgttctttttggt 18319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 46920418 - 46920455
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  46920418 atgtaattcatctattatttctttatgttctttttggt 46920455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 16850035 - 16849879
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16850035 ggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttg 16849936  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16849935 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 16849879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 31738929 - 31738741
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaat-gttttattcctaagaatgacattt 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| |||||||  ||    
T  31738929 ggaacaaattatacccaggaaattttttaacccatgatctccccatttttattcccatgaaagaggagttggaatatttttattcctaggaatgactatt 31738830  T
Q  117 gccttgctacatgaaaacccca---------ctaccaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 196  Q
     ||||||||| |||||||||||         ||||||||||||||||||||||||||||||||||||| || || ||||||||||||||    
T  31738829 cccttgctacgtgaaaaccccactatgtctcctaccaccatgttttttcaactgccaattaatttctccatgcaatgaacgtgttgatt 31738741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 16849823 - 16849786
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  16849823 atgtaattcatctattatttctttatgttctttttggt 16849786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 38007099 - 38007255
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38007099 ggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttg 38007198  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38007199 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 38007255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 51083459 - 51083647
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatg-ttttattcctaagaatgacattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||  ||    
T  51083459 ggaacaaattatacccaggaaaatttttaacccatgatctctccatttttattcccatgaaagaggagtttgaatgtttttattcctaggaatgactatt 51083558  T
Q  117 gccttgctacatgaaaacccca---------ctaccaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 196  Q
    |||||||||| |||||||||||         ||||||||||||||||||||||||||||||||||||| || || ||| | ||||||||    
T  51083559 gccttgctacgtgaaaaccccactatgtctcctaccaccatgttttttcaactgccaattaatttctccatgcaatgaccatgttgatt 51083647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 38007311 - 38007348
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  38007311 atgtaattcatctattatttctttatgttctttttggt 38007348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 11465682 - 11465838
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11465682 ggaacaaattatacccatgaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttg 11465781  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11465782 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 11465838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 3428579 - 3428735
Alignment:
Q  18 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 117  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3428579 ggaacaaattatacccaggaaaatttttaacctatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttg 3428678  T
Q  118 ccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3428679 ccttgctacatgaaaaccccactaccaccatgttttttcaactaccaattaatttct 3428735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 3428791 - 3428828
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  3428791 atgtaattcatctattatttctttatgttctttttggt 3428828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 11465894 - 11465931
Alignment:
Q  203 atgtaatccatcttttatttctttatgttctttttggt 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  11465894 atgtaattcatctattatttctttatgttctttttggt 11465931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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