View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1871_high_28 (Length: 222)

Name: NF1871_high_28
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1871_high_28
NF1871_high_28
[»] chr7 (2 HSPs)
chr7 (16-205)||(246035-246224)
chr7 (100-176)||(38042092-38042170)
[»] chr6 (3 HSPs)
chr6 (100-174)||(14560569-14560643)
chr6 (100-176)||(6609530-6609606)
chr6 (100-176)||(17177533-17177609)
[»] chr5 (3 HSPs)
chr5 (100-174)||(34082458-34082532)
chr5 (100-155)||(41748270-41748325)
chr5 (100-145)||(10117954-10117999)
[»] chr4 (1 HSPs)
chr4 (100-179)||(18931317-18931394)
[»] scaffold0236 (1 HSPs)
scaffold0236 (100-170)||(12669-12739)
[»] chr2 (2 HSPs)
chr2 (132-176)||(25553053-25553097)
chr2 (100-174)||(41686899-41686973)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 246224 - 246035
Alignment:
Q  16 atgggaagaaacacttattagtgcattggctaaaaaggaagggaaagttaaagggaattggtaccaagggtcacaaccttctacttattaaaaaggtaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  246224 atgggaagaaacacttattagtgcattggctaaaaaggaagggaaagttaaagggaattggtaccaagggtcacaaccttctacttattaaaaaggtaat 246125  T
Q  116 taaaagtttagattttcactgcagagcatccagtgaaattttcatcggagaggatccaagttcagatgggttagatgttaatgccttttg 205  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  246124 taaaggtttagattttcactgcagagcatccagtgaaattttcatcggagaggatccaagttcagatgagctagatgttaatgccttttg 246035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 38042092 - 38042170
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgc--agagcatccagtgaaattttcatcggagaggatccaagt 176  Q
    ||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||  ||| |||| |||||||||||    
T  38042092 ttattaaaagggtagttaaaagtttagattttcactgcagagagcatccagtgaaatcctcaccggaaaggatccaagt 38042170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 14560569 - 14560643
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaattttcatcggagaggatccaa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  14560569 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaattctcactggagaggatccaa 14560643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 6609606 - 6609530
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaattttcatcggagaggatccaagt 176  Q
    |||| |||| |||||||||| ||| |||| | |||||||||||||||||| ||||| |||   ||||||||| ||||    
T  6609606 ttatgaaaagggtaattaaaggttcagatctacactgcagagcatccagtaaaattctcactagagaggatcaaagt 6609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 17177533 - 17177609
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaattttcatcggagaggatccaagt 176  Q
    ||||||||| |||| |||||  || |||| | ||| ||| || ||||||||||||||||| |||||| |||||||||    
T  17177533 ttattaaaagggtatttaaagtttcagatctacaccgcacagaatccagtgaaattttcaccggagatgatccaagt 17177609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 34082532 - 34082458
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaattttcatcggagaggatccaa 174  Q
    ||||||||| |||||||||| |||||||||||||| | ||||||| | |||||||| ||||||||||||||||||    
T  34082532 ttattaaaagggtaattaaaggtttagattttcaccgtagagcattcggtgaaattctcatcggagaggatccaa 34082458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 41748325 - 41748270
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaatt 155  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  41748325 ttattaaaagggtaattaaaggtttagattttcactccagagcatccagtgaaatt 41748270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 10117999 - 10117954
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatc 145  Q
    ||||||||| |||||||||| ||| ||||||||||||| |||||||    
T  10117999 ttattaaaagggtaattaaaggttcagattttcactgcggagcatc 10117954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 18931317 - 18931394
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaattttcatcggagaggatccaagttca 179  Q
    ||||||||| | |||||||||||| |||||||||||  |||| ||| |||||||||||||  ||||||||||||||||||    
T  18931317 ttattaaaaggataattaaaagttcagattttcact--agagtatctagtgaaattttcactggagaggatccaagttca 18931394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 12739 - 12669
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaattttcatcggagaggat 170  Q
    ||||||||| |||||||||| ||| |||| | |||||||||| ||||||||||||||| |  |||||||||    
T  12739 ttattaaaagggtaattaaaggttcagatctacactgcagagtatccagtgaaattttgactggagaggat 12669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 25553097 - 25553053
Alignment:
Q  132 cactgcagagcatccagtgaaattttcatcggagaggatccaagt 176  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||    
T  25553097 cactgcagagcatccagtaaaattctcatcggagaagatccaagt 25553053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 41686973 - 41686899
Alignment:
Q  100 ttattaaaaaggtaattaaaagtttagattttcactgcagagcatccagtgaaattttcatcggagaggatccaa 174  Q
    |||||||||| ||||||||||||| |||| | ||||| | | ||||  |||||||| |||||| |||||||||||    
T  41686973 ttattaaaaatgtaattaaaagttcagatctacactggacaacatcatgtgaaattctcatcgaagaggatccaa 41686899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University