View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1871_high_3 (Length: 513)

Name: NF1871_high_3
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1871_high_3
NF1871_high_3
[»] chr3 (11 HSPs)
chr3 (5-254)||(34705601-34705851)
chr3 (252-407)||(46920713-46920870)
chr3 (407-511)||(11031254-11031358)
chr3 (407-511)||(18320063-18320167)
chr3 (407-511)||(46920565-46920669)
chr3 (250-407)||(11031051-11031210)
chr3 (253-407)||(18320211-18320367)
chr3 (403-513)||(52125939-52126050)
chr3 (255-393)||(52125745-52125886)
chr3 (250-309)||(37609250-37609309)
chr3 (254-311)||(8082496-8082553)
[»] chr4 (10 HSPs)
chr4 (252-407)||(54207843-54208000)
chr4 (407-511)||(54207695-54207799)
chr4 (407-511)||(9117902-9118006)
chr4 (407-513)||(34967548-34967653)
chr4 (257-407)||(9118050-9118202)
chr4 (253-407)||(27742168-27742327)
chr4 (254-407)||(34967697-34967851)
chr4 (439-513)||(27742400-27742473)
chr4 (255-312)||(30199956-30200013)
chr4 (251-311)||(26695821-26695881)
[»] chr1 (5 HSPs)
chr1 (252-407)||(38007606-38007763)
chr1 (407-511)||(38007458-38007562)
chr1 (403-513)||(51083787-51083898)
chr1 (254-393)||(51083951-51084092)
chr1 (255-311)||(14236398-14236454)
[»] chr8 (13 HSPs)
chr8 (255-407)||(11466189-11466343)
chr8 (407-511)||(3428938-3429042)
chr8 (407-511)||(11466041-11466145)
chr8 (256-407)||(3429086-3429239)
chr8 (277-342)||(6228067-6228132)
chr8 (253-287)||(6227960-6227994)
chr8 (254-311)||(38526483-38526540)
chr8 (251-311)||(38567668-38567728)
chr8 (254-312)||(20267449-20267507)
chr8 (254-312)||(21054078-21054136)
chr8 (254-311)||(9686364-9686421)
chr8 (243-312)||(18167144-18167213)
chr8 (243-312)||(18630698-18630767)
[»] chr7 (6 HSPs)
chr7 (407-511)||(16849577-16849681)
chr7 (403-489)||(31738460-31738547)
chr7 (255-407)||(16849393-16849533)
chr7 (248-333)||(31738260-31738345)
chr7 (480-513)||(31738568-31738601)
chr7 (254-311)||(31293022-31293079)
[»] chr2 (2 HSPs)
chr2 (252-311)||(15805905-15805964)
chr2 (351-387)||(16627317-16627353)
[»] chr5 (2 HSPs)
chr5 (254-311)||(25898072-25898129)
chr5 (255-311)||(22213266-22213322)
[»] chr6 (1 HSPs)
chr6 (251-311)||(4653571-4653631)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 34705851 - 34705601
Alignment:
Q  5 cgaagaaaatacaaacaataccaacaataaattgatccaatttattagcatatattcacgaagactcgataaaaaacaagcaacacttgaaataattatt 104  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34705851 cgaagaaaatacaaacaataccaacaataaattgatccaacttattagcatatattcacgaagactcgataaaaaacaagcaacacttgaaataattatt 34705752  T
Q  105 ttcattgagctctccaaacaagtttcaaaacctttctt-nnnnnnnnngtttcatcgccaaaatgtagccatcattccttccatgtcatcctagagcctc 203  Q
    |||||||||||||||||| |||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34705751 ttcattgagctctccaaataagtttcaaaacctttcttaaaaaaaaaagtttcatcgccaaaatgtagccatcattccttccatgtcatcttagagcctc 34705652  T
Q  204 ttcttatgttataacaaaccgtgatggagccgtaatgacttcataaactta 254  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  34705651 ttcttatgttgtaacaaaccgtgatggggccgtaatgacttcataaactta 34705601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 252 - 407
Target Start/End: Complemental strand, 46920870 - 46920713
Alignment:
Q  252 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnn 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||            
T  46920870 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaaaa 46920771  T
Q  351 gtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  46920770 gtgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 46920713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 407 - 511
Target Start/End: Original strand, 11031254 - 11031358
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  11031254 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 11031353  T
Q  507 accat 511  Q
    |||||    
T  11031354 accat 11031358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 18320167 - 18320063
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  18320167 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 18320068  T
Q  507 accat 511  Q
    |||||    
T  18320067 accat 18320063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 46920669 - 46920565
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  46920669 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 46920570  T
Q  507 accat 511  Q
    |||||    
T  46920569 accat 46920565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 250 - 407
Target Start/End: Original strand, 11031051 - 11031210
Alignment:
Q  250 acttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnn 348  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||          
T  11031051 acttaggagacgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaa 11031150  T
Q  349 nngtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
      |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  11031151 aagtgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 11031210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 253 - 407
Target Start/End: Complemental strand, 18320367 - 18320211
Alignment:
Q  253 tagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnng 351  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| |||        |    
T  18320367 tagggggcgtttgtttcaggaattcataaattaattccaggaataacttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaaaag 18320268  T
Q  352 tgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  18320267 tgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 18320211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 403 - 513
Target Start/End: Original strand, 52125939 - 52126050
Alignment:
Q  403 aaatatgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaattta-ttttactatattttattttcattataacttgaagcatttcaa 501  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||    
T  52125939 aaatatgatacagttacaaaaatacccctaccctgtttctaaatcaatttgaatttatttttacaatattttattctgattataacttgaagcatttcaa 52126038  T
Q  502 aatacaccataa 513  Q
    ||||||||||||    
T  52126039 aatacaccataa 52126050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 393
Target Start/End: Original strand, 52125745 - 52125886
Alignment:
Q  255 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggtattt---nnnnnnnng 351  Q
    |||||||||||||||  ||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||||||| || |||||           |    
T  52125745 gggggcgtttgtttcgaggattcataaattaatctcgggaataacttacctgggaataaagtagtgggaagtttattcccggatattttgaaaaaaaaag 52125844  T
Q  352 tgtttggttagtattttaatttcccaggaatattttcaaaaa 393  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  52125845 tgtttggttagtattctaattcctcaggaatattttcaaaaa 52125886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 37609309 - 37609250
Alignment:
Q  250 acttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccggga 309  Q
    |||||||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||    
T  37609309 acttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccggga 37609250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 8082553 - 8082496
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    |||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  8082553 agggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 8082496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 8e-53; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 252 - 407
Target Start/End: Complemental strand, 54208000 - 54207843
Alignment:
Q  252 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnn 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||            
T  54208000 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtggaaagtttattcctgggtattttaaaaaaaa 54207901  T
Q  351 gtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  54207900 gtgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 54207843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 54207799 - 54207695
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  54207799 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 54207700  T
Q  507 accat 511  Q
    |||||    
T  54207699 accat 54207695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 9118006 - 9117902
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  9118006 atgatacagttacaaaaatacctctaccttatttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 9117907  T
Q  507 accat 511  Q
    |||||    
T  9117906 accat 9117902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 407 - 513
Target Start/End: Complemental strand, 34967653 - 34967548
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  34967653 atgatacagttataaaaatacctctaccttgtttctaaatcaatttgaattta-tttactatattttattctcattataacttgaagcatttcaaaatac 34967555  T
Q  507 accataa 513  Q
    |||||||    
T  34967554 accataa 34967548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 257 - 407
Target Start/End: Complemental strand, 9118202 - 9118050
Alignment:
Q  257 gggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngtgtt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||||||||| |||        |||||    
T  9118202 gggcgtttgtttcagggattcataaattaatcccaggaataacttacctgaaaataaagtagtgggaagtttattcctgggtattttaaaaaaaagtgtt 9118103  T
Q  356 tggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  9118102 tggttagtattttaatttttcaggaatattttcaaaaaatgttctcataaata 9118050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 253 - 407
Target Start/End: Original strand, 27742168 - 27742327
Alignment:
Q  253 tagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggtattt----nnnnnn 348  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||  |||||||||              
T  27742168 tagggggcgtttgtttcagggattcataaattaattccaggaataacttacctgggaataaagtagtgggaagtttatttatgggtatttttaaaaaaaa 27742267  T
Q  349 nngtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
      |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  27742268 aagtgtttggttagtattttaatttttcaggaatattttcgaaaaatgttcccataaata 27742327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 254 - 407
Target Start/End: Complemental strand, 34967851 - 34967697
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngt 352  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||| |||||| |||         |    
T  34967851 agggggcgtttgtttcatagattcataaattaattccaggaataactta-cctggaataaagtagtgggaagtttattcatgggtattttaaaaaaaaat 34967753  T
Q  353 gtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34967752 gtttggttagtattttaatttcccaggaatattttcaaaaaatgttcccataaata 34967697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 439 - 513
Target Start/End: Original strand, 27742400 - 27742473
Alignment:
Q  439 ttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatacaccataa 513  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  27742400 ttctaaatcaatttgaatctattt-actatattttattctcattataacttgaagcatttcaaaatacatcataa 27742473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 30199956 - 30200013
Alignment:
Q  255 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 312  Q
    |||||||||||||||| |||| || |||||| |||| |||||||||| ||| ||||||    
T  30199956 gggggcgtttgtttcacggatgcaaaaattattccctggaataactttcccaggaata 30200013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 26695821 - 26695881
Alignment:
Q  251 cttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    |||||||| |||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  26695821 cttaggggacgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 26695881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 252 - 407
Target Start/End: Complemental strand, 38007763 - 38007606
Alignment:
Q  252 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnn 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||            
T  38007763 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtggaaagtttattcctgggtattttaaaaaaaa 38007664  T
Q  351 gtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  38007663 gtgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 38007606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 38007562 - 38007458
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  38007562 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 38007463  T
Q  507 accat 511  Q
    |||||    
T  38007462 accat 38007458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 403 - 513
Target Start/End: Complemental strand, 51083898 - 51083787
Alignment:
Q  403 aaatatgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaattta-ttttactatattttattttcattataacttgaagcatttcaa 501  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  51083898 aaatatgatacagttacaaaaatacccctaccctgtttttaaatcaatttgaatttatttttactatattttattctgattataacttgaagcatttcaa 51083799  T
Q  502 aatacaccataa 513  Q
    ||||||||||||    
T  51083798 aatacaccataa 51083787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 254 - 393
Target Start/End: Complemental strand, 51084092 - 51083951
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggtattt--nnnnnnnng 351  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||| |||||||||||||| |||||          |    
T  51084092 agggggtgtttgtttcggggattcataaattaatcccgggaataacttacatgggaataaagtagtgggaagtttattcctggatattttgaaaaaaaag 51083993  T
Q  352 tgtttggttagtattttaatttcccaggaatattttcaaaaa 393  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  51083992 tgtttggttagtattctaattcctcaggaatattttcaaaaa 51083951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 14236398 - 14236454
Alignment:
Q  255 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    ||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  14236398 gggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 14236454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 255 - 407
Target Start/End: Complemental strand, 11466343 - 11466189
Alignment:
Q  255 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngtg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||        |||    
T  11466343 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaaaagtg 11466244  T
Q  354 tttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  11466243 tttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 11466189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 3429042 - 3428938
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  3429042 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 3428943  T
Q  507 accat 511  Q
    |||||    
T  3428942 accat 3428938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 11466145 - 11466041
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  11466145 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 11466046  T
Q  507 accat 511  Q
    |||||    
T  11466045 accat 11466041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 256 - 407
Target Start/End: Complemental strand, 3429239 - 3429086
Alignment:
Q  256 ggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngtgt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||        ||||    
T  3429239 ggggcgtttgtttcagggattcataaattaatcccaggaataatttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaaaagtgt 3429140  T
Q  355 ttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    |||||||||||||||||||  ||||||||||||| ||||||||| |||||||||    
T  3429139 ttggttagtattttaatttttcaggaatattttcaaaaaatgtttccataaata 3429086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 6228132 - 6228067
Alignment:
Q  277 cataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggtattt 342  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6228132 cataaattaatcctaggaataacttacccgtgaataaagtagtggaaagtttattcctgggtattt 6228067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 6227960 - 6227994
Alignment:
Q  253 tagggggcgtttgtttcagggattcataaattaat 287  Q
    |||||||||||||||||||||||||||||||||||    
T  6227960 tagggggcgtttgtttcagggattcataaattaat 6227994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 38526483 - 38526540
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    |||||||||||||||  ||||  ||||||||| ||||||||||||| |||||||||||    
T  38526483 agggggcgtttgtttttgggaaacataaattattcccaggaataacatacccgggaat 38526540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 38567728 - 38567668
Alignment:
Q  251 cttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    ||||||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  38567728 cttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 38567668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 20267507 - 20267449
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 312  Q
    ||||||||||||||||| |||| || |||||| |||| |||||||||| ||| ||||||    
T  20267507 agggggcgtttgtttcacggatgcaaaaattattccctggaataactttcccaggaata 20267449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 21054136 - 21054078
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 312  Q
    ||||||||||||||||| |||| || |||||| |||| |||||||||| ||| ||||||    
T  21054136 agggggcgtttgtttcacggatgcaaaaattattccctggaataactttcccaggaata 21054078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 9686364 - 9686421
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    |||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  9686364 agggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 9686421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 18167213 - 18167144
Alignment:
Q  243 ttcataaacttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 312  Q
    |||| ||||||||| ||||||||||||| |||| || |||||| |||| |||||||| | ||| ||||||    
T  18167213 ttcacaaacttaggaggcgtttgtttcatggatacaaaaattattccctggaataacattcccaggaata 18167144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 18630767 - 18630698
Alignment:
Q  243 ttcataaacttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 312  Q
    |||| ||||||||| ||||||||||||| |||| || |||||| |||| |||||||| | ||| ||||||    
T  18630767 ttcacaaacttaggaggcgtttgtttcatggatacaaaaattattccctggaataacattcccaggaata 18630698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 407 - 511
Target Start/End: Original strand, 16849577 - 16849681
Alignment:
Q  407 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactatattttattttcattataacttgaagcatttcaaaatac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  16849577 atgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaatttattttactacattttattttcattataacttgaagcatttgaaaatac 16849676  T
Q  507 accat 511  Q
    |||||    
T  16849677 accat 16849681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 31738460 - 31738547
Alignment:
Q  403 aaatatgatacagttacaaaaatacctctaccttgtttctaaatcaatttgaattta-ttttactatattttattttcattataactt 489  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  31738460 aaatatgatacagttacaaaaatacccctaccctgtttctaaatcaatttgaatttatttttactatattttattctgattataactt 31738547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 255 - 407
Target Start/End: Original strand, 16849393 - 16849533
Alignment:
Q  255 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngtg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||              ||| ||||||||||||||||| |||        |||    
T  16849393 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacc--------------tgggaagtttattcctgggtattttaaaaaaaagtg 16849478  T
Q  354 tttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 407  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  16849479 tttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 16849533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 31738260 - 31738345
Alignment:
Q  248 aaacttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcc 333  Q
    ||||| |||| ||||||||||| |||||||||||||||||||| | ||||||||| | |||||||||||||||| |||||||||||    
T  31738260 aaactaagggagcgtttgtttcggggattcataaattaatcccggaaataacttatctgggaataaagtagtgggaagtttattcc 31738345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 480 - 513
Target Start/End: Original strand, 31738568 - 31738601
Alignment:
Q  480 attataacttgaagcatttcaaaatacaccataa 513  Q
    ||||||||||||||||||||||||||||||||||    
T  31738568 attataacttgaagcatttcaaaatacaccataa 31738601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 31293022 - 31293079
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    |||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  31293022 agggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 31293079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 15805964 - 15805905
Alignment:
Q  252 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    |||||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  15805964 ttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 15805905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 16627353 - 16627317
Alignment:
Q  351 gtgtttggttagtattttaatttcccaggaatatttt 387  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  16627353 gtgtttggtaagtaatttaatttcccaggaatatttt 16627317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 25898129 - 25898072
Alignment:
Q  254 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    |||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  25898129 agggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 25898072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 22213266 - 22213322
Alignment:
Q  255 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    ||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  22213266 gggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 22213322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 4653571 - 4653631
Alignment:
Q  251 cttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 311  Q
    ||||||||||||||||||  ||||  || |||||| ||||||||||||| |||||| ||||    
T  4653571 cttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaat 4653631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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