View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1871_low_1 (Length: 623)

Name: NF1871_low_1
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1871_low_1
NF1871_low_1
[»] chr2 (5 HSPs)
chr2 (163-315)||(31370276-31370429)
chr2 (319-401)||(4406780-4406865)
chr2 (319-399)||(9310627-9310710)
chr2 (13-75)||(31381185-31381247)
chr2 (318-355)||(15000361-15000398)
[»] chr7 (2 HSPs)
chr7 (319-401)||(44059630-44059715)
chr7 (469-601)||(44059781-44059915)
[»] chr6 (2 HSPs)
chr6 (368-451)||(8268825-8268909)
chr6 (527-605)||(8268911-8268989)
[»] chr3 (1 HSPs)
chr3 (319-402)||(6910811-6910897)
[»] chr4 (1 HSPs)
chr4 (319-401)||(4762981-4763066)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 7e-60; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 31370429 - 31370276
Alignment:
Q  163 acagttatgtttttaggcaatttttgaataaataaggaaactgaattgaaagtaacaaggcaaatatttgcgagtatattaatttacctttgctttctct 262  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  31370429 acagttatgtttttaggcaatttttgaataaatagggaaactgaatggaaagtaacaaggcaattatttgcgagtatataaatttccctttgctttctct 31370330  T
Q  263 cctataattttataaacta-atttcctgttgtaatacaaattcttgcctcatta 315  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  31370329 cctataattttaaaaactagatttcctgttgtaatacaagttcttgcctcatta 31370276  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 4406865 - 4406780
Alignment:
Q  319 tgtcacgacccaacctctagccgtgaccggcgcacag---gctgataaataaagcctggccagcctaacaaaccaaacatgacaaa 401  Q
    |||||||||||||| ||||||||||||||||||||||    |||||| || ||| |||||||||||||||||||| || |||||||    
T  4406865 tgtcacgacccaacttctagccgtgaccggcgcacagactactgatacatgaagtctggccagcctaacaaaccacacttgacaaa 4406780  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 9310627 - 9310710
Alignment:
Q  319 tgtcacgacccaacctctagccgtgaccggcgcacag---gctgataaataaagcctggccagcctaacaaaccaaacatgaca 399  Q
    |||||||||||||| ||||||||||||||||||||||    ||| || || ||| |||||||||||||  |||||||| |||||    
T  9310627 tgtcacgacccaacttctagccgtgaccggcgcacagaccactggtacatgaagtctggccagcctaaagaaccaaacttgaca 9310710  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 31381247 - 31381185
Alignment:
Q  13 attattctcaaatggaagaaaataaggtaagtagatcacagagtcagagtttatcaattgatg 75  Q
    |||| |||||||||||| ||||||||||| |||  ||||| |||| ||||||||||| |||||    
T  31381247 attactctcaaatggaaaaaaataaggtatgtaagtcacaaagtcggagtttatcaagtgatg 31381185  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 15000361 - 15000398
Alignment:
Q  318 ctgtcacgacccaacctctagccgtgaccggcgcacag 355  Q
    ||||||||||||||| || |||||||||||||||||||    
T  15000361 ctgtcacgacccaacttcgagccgtgaccggcgcacag 15000398  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 44059630 - 44059715
Alignment:
Q  319 tgtcacgacccaacctctagccgtgaccggcgcacaggc---tgataaataaagcctggccagcctaacaaaccaaacatgacaaa 401  Q
    |||||||||||||| |||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||| |||||||    
T  44059630 tgtcacgacccaacttctagccgtgaccggcgcacagactaatgatacataaagtctggccagcctaacaaaccaaacttgacaaa 44059715  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 601
Target Start/End: Original strand, 44059781 - 44059915
Alignment:
Q  469 gtattttcgacattttcaacactagaaccttgtttacaa-cttatatcatcactcagaatatgatagacttcatatctaaggtca-tacatccgaaattc 566  Q
    |||| ||| |||||||||| |  |||||| ||||||||| | |||  |||||  |||||| ||| ||||| ||||||||||||   ||||| | ||| |     
T  44059781 gtatcttcaacattttcaaaatcagaaccctgtttacaaacatatgccatcaagcagaatttgaaagactacatatctaaggtttgtacattccaaaata 44059880  T
Q  567 aaagtattcctaaacacaaatagctgcagatacat 601  Q
    |||||||||||| || |||||||||||||||||||    
T  44059881 aaagtattcctagactcaaatagctgcagatacat 44059915  T

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Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 8268825 - 8268909
Alignment:
Q  368 agcctggccagcctaacaaaccaaacatgac-aaaacataagcagatacctttagaatgccagtacaatgtgaaattgtaattta 451  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||| |  |||| |||||||||    
T  8268825 agcctggccagcctaacaaaccatacatgacaaaaacataagcaaatatctttagaatgccagtacactaagaaactgtaattta 8268909  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 527 - 605
Target Start/End: Original strand, 8268911 - 8268989
Alignment:
Q  527 tatgatagacttcatatctaaggtcatacatccgaaattcaaagtattcctaaacacaaatagctgcagatacatcaat 605  Q
    ||||||||||| |||||||||||| || |||||||| ||||||||||||  |||||||| |||||| ||||||||||||    
T  8268911 tatgatagactacatatctaaggttattcatccgaacttcaaagtattcagaaacacaagtagctgtagatacatcaat 8268989  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 6910811 - 6910897
Alignment:
Q  319 tgtcacgacccaacctctagccgtgaccggcgcacag---gctgataaataaagcctggccagcctaacaaaccaaacatgacaaaa 402  Q
    |||||||||||||| ||||||||||||||||||||||    |||||| |||||  |||||||||||||||||||| || ||||||||    
T  6910811 tgtcacgacccaacttctagccgtgaccggcgcacagactactgatacataaaatctggccagcctaacaaaccacacttgacaaaa 6910897  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 4762981 - 4763066
Alignment:
Q  319 tgtcacgacccaacctctagccgtgaccggcgcacag---gctgataaataaagcctggccagcctaacaaaccaaacatgacaaa 401  Q
    |||||||||||||| ||||||||||||| ||||||||    |||||| |||||| |||||||||||||||||||| || |||||||    
T  4762981 tgtcacgacccaacttctagccgtgaccagcgcacagactactgatacataaagtctggccagcctaacaaaccacacttgacaaa 4763066  T

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