View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_13 (Length: 356)
Name: NF1871_low_13
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 52 - 334
Target Start/End: Original strand, 8464800 - 8465080
Alignment:
| Q |
52 |
ttctatcttctcgttgattttagattatgaaattcaaaatcacaattagaaaagttcgaacgataataattttaaaaaactagtaagacacgtgagaggg |
151 |
Q |
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| T |
8464800 |
ttctatcttctcattgattttagattatgaaattcaaaatcacaattagaaaagtccgaacgataataattttaaaaaactagtaagacacgtgagaggg |
8464899 |
T |
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| Q |
152 |
atggagaaaaataatttcattagtaatgaaacacaagaaacttttggaaattgtaggaaattgctcgtggaaatctgt-------------cattcacac |
238 |
Q |
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| T |
8464900 |
atggagaaaaataatttcattattaatgaaacacaagaaacttttggaaattgtaggaaattgctcgtggaaatctgtcgaataatatttgcattcacac |
8464999 |
T |
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| Q |
239 |
gtttattccacacctcattttatttcatattttcccgatatcatatctattagatgatcctttttcttcctttctctcgatgtgtagaatagatat |
334 |
Q |
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| T |
8465000 |
gttcattccacacctcattaa---------------ggtatcatatctattagatcatcctttttcttcctttctctcgatgtgtagaatagatat |
8465080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8464643 - 8464737
Alignment:
| Q |
1 |
agttgaatcgcgttgctctagaattggatttaatggaaaaaattctgatcgttctatcttctcgttgattttagattatgaaattcaaaatcacaa |
96 |
Q |
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| T |
8464643 |
agttgaatcgcgttgctctagaattggatttaatggaaaaatttctgat-gttctatcttctcgttgattttatattatgaaattcaaaatcacaa |
8464737 |
T |
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