View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_14 (Length: 351)
Name: NF1871_low_14
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 28328681 - 28328359
Alignment:
| Q |
14 |
atatgggaaaattcaaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggta |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28328681 |
atatgggaaaattcaaatatgttcaagcctgaaagatttttggaatgtgacattaattataagggtaataattttgagctcataccttttggggcaggta |
28328582 |
T |
|
| Q |
114 |
aaagaatttgcccaggattgccattagctcataggagtgtgcacttaattgtggcatcccttctatgcaactttgattggaaacttgctgatgggctaaa |
213 |
Q |
| |
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|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28328581 |
aaagaatttgtccgggattgccattagctcataggaatgtgcacttaattgtggcatcccttctatgcaactttgattggaaacttgctgatgggctaaa |
28328482 |
T |
|
| Q |
214 |
gccagaagacatgaatatggacgaacaatttgggctaaccttaaggaggatcgaaactcttcgagttcaagctacttcttcaacataggtggatatgttt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28328481 |
gccagaagacatgaatatggacgaacaatttgggctaaccttaaggaggattcaaactcttcgagttcaagctacttcttcaacataggtggatatgttt |
28328382 |
T |
|
| Q |
314 |
taagaataattttgagtgtaatt |
336 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
28328381 |
taagaataattttgagtgtaatt |
28328359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 28306997 - 28306692
Alignment:
| Q |
17 |
tgggaaaattcaaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaa |
116 |
Q |
| |
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||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||| || || |||| |
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| T |
28306997 |
tgggaaaatccaaataagtttgagcctgaaagatttttggagcgtgacattaattataagggtaacaattttgagcttataccatttggggctggcaaaa |
28306898 |
T |
|
| Q |
117 |
gaatttgcccaggattgccattagctcataggagtgtgcacttaattgtggcatcccttctatgcaactttgattggaaacttgctgatgggctaaagcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||| || |
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| T |
28306897 |
gaatttgcccaggattgccattagctcataggagtgtgcatttaattgtggcatcccttctacgcaattttgaatggacacttgctgatgggttaaatcc |
28306798 |
T |
|
| Q |
217 |
agaagacatgaatatggacgaacaatttgggctaaccttaaggaggatcgaaactcttcgagttcaagctacttcttcaacataggtggatatgttttaa |
316 |
Q |
| |
|
||||||||||| |||||| || | ||||||| |||| |||| |||| || || |||||||||||||||||| ||| ||| ||||||| ||||||||| || |
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| T |
28306797 |
agaagacatgagtatggatgagcgatttggggtaacattaaagagggtccaatctcttcgagttcaagctatttcatcagcataggtagatatgtttgaa |
28306698 |
T |
|
| Q |
317 |
gaataa |
322 |
Q |
| |
|
| |||| |
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|
| T |
28306697 |
ggataa |
28306692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 28290971 - 28291241
Alignment:
| Q |
21 |
aaaattcaaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaagaat |
120 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |||||||| || |||||||| |
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| T |
28290971 |
aaaatccaaatatgttcatgcccgaaagatttttggagtgtgacattaattataagggcaaccattttgagcttataccctttggagctggcaaaagaat |
28291070 |
T |
|
| Q |
121 |
ttgcccaggattgccattagctcataggagtgtgcacttaattgtggcatcccttctatgcaactttgattggaaacttgctgatgggctaaagccagaa |
220 |
Q |
| |
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||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||| ||||| |
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| T |
28291071 |
ttgtccaggattgtcattagctcataggaatgtgcacttaattgtggcatcccttctacacaactttgaatggatacttgcggatgggctaaagtcagaa |
28291170 |
T |
|
| Q |
221 |
gacatgaatatggacgaacaatttgggctaaccttaaggaggatcgaaactcttcgagttcaagctacttc |
291 |
Q |
| |
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| ||||||||||| || | ||||||| || |||||| ||| | || ||||||||||||||| |||||| |
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| T |
28291171 |
catatgaatatggaggagcgatttgggttatccttaaagagagtacaacctcttcgagttcaagttacttc |
28291241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 41 - 287
Target Start/End: Complemental strand, 28319808 - 28319562
Alignment:
| Q |
41 |
cctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaagaatttgcccaggattgccattag |
140 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||||||| |
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| T |
28319808 |
cctgaaagatttttggagtgtgacattaactataaaggtaataattttgagcttataccctttggagctggcaaaagaatttgtccaggattgccattag |
28319709 |
T |
|
| Q |
141 |
ctcataggagtgtgcacttaattgtggcatcccttctatgcaactttgattggaaacttgctgatgggctaaagccagaagacatgaatatggacgaaca |
240 |
Q |
| |
|
||||||| | | |||| ||||| ||||||||||||||| ||| ||||| ||||| |||||||||||||||| || ||| | |||| ||||||||||| |
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| T |
28319708 |
ctcatagaactatgcatttaatggtggcatcccttctacacaattttgaatggaatcttgctgatgggctaataccggaacaattgaacatggacgaaca |
28319609 |
T |
|
| Q |
241 |
atttgggctaaccttaaggaggatcgaaactcttcgagttcaagcta |
287 |
Q |
| |
|
|||||| ||||||||| |||| || || |||||||||||||||||| |
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|
| T |
28319608 |
atttggattaaccttaaagagggtccaacctcttcgagttcaagcta |
28319562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 28295995 - 28295732
Alignment:
| Q |
21 |
aaaattcaaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaagaat |
120 |
Q |
| |
|
||||| || ||||||| | |||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||| ||||||||||| |||||||| |
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| T |
28295995 |
aaaatccagatatgtttatgcctgaaagatttttggagtgtgacattaagtatatgggtagcaattttgagcttataccgtttggagcaggcaaaagaat |
28295896 |
T |
|
| Q |
121 |
ttgcccaggattgccattagctcataggagtgtgcacttaattgtggcatcccttctatgcaactttgattggaaacttgctgatgggctaaagccagaa |
220 |
Q |
| |
|
||| ||||| ||||||||||||||||| | | |||| || ||||| ||||| |||||| |||| ||||| |||| ||||||||||||||||||||||||| |
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|
| T |
28295895 |
ttgtccagggttgccattagctcatagaactatgcatttgattgtagcatctcttctacgcaattttgaatggacacttgctgatgggctaaagccagaa |
28295796 |
T |
|
| Q |
221 |
gacatgaatatggacgaacaatttgggctaaccttaaggaggatcgaaactcttcgagttcaag |
284 |
Q |
| |
|
|||||||||||| | || |||||||| |||| ||| || ||| || ||||||||||||||| |
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|
| T |
28295795 |
gacatgaatatgaaggagcaatttggaataactctaaagatgattcaatctcttcgagttcaag |
28295732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 45 - 287
Target Start/End: Complemental strand, 28302841 - 28302599
Alignment:
| Q |
45 |
aaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaagaatttgcccaggattgccattagctca |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||||| ||| |||||||||| ||||| |
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|
| T |
28302841 |
aaagatttttggagtgtgacattaattataagggtaataattttgaacttataccctttggggcaggcaaaagaatttttccatgattgccattggctca |
28302742 |
T |
|
| Q |
145 |
taggagtgtgcacttaattgtggcatcccttctatgcaactttgattggaaacttgctgatgggctaaagccagaagacatgaatatggacgaacaattt |
244 |
Q |
| |
|
|||| ||||| ||||||||| ||||||||||| |||| ||||| |||| | ||| |||||| |||| ||||||||||||||||| || || |||||| |
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|
| T |
28302741 |
tagggtagtgcatttaattgtgacatcccttctacgcaattttgaatggacatttgttgatggattaaaaccagaagacatgaatatagaagagcaattt |
28302642 |
T |
|
| Q |
245 |
gggctaaccttaaggaggatcgaaactcttcgagttcaagcta |
287 |
Q |
| |
|
||| |||| |||| |||| | || |||||||||||||||||| |
|
|
| T |
28302641 |
gggttaacattaaagagggttcaacctcttcgagttcaagcta |
28302599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 28317245 - 28317297
Alignment:
| Q |
28 |
aaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggta |
80 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
28317245 |
aaatatattcacgcctgaaagatttttggaggatgacattaattattagggta |
28317297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 5594187 - 5594236
Alignment:
| Q |
71 |
tataagggtaataattttgagctcataccttttggagcaggtaaaagaat |
120 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| || |||| |||||| |
|
|
| T |
5594187 |
tataagggtaataattttgagttcattccttttggtgctggtagaagaat |
5594236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 22831878 - 22831829
Alignment:
| Q |
71 |
tataagggtaataattttgagctcataccttttggagcaggtaaaagaat |
120 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| || |||| |||||| |
|
|
| T |
22831878 |
tataagggtaataattttgagttcattccttttggtgctggtagaagaat |
22831829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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