View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_15 (Length: 323)
Name: NF1871_low_15
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 42011761 - 42011995
Alignment:
| Q |
54 |
tgaaagtctcttaattttataag-actaaaaatatatacatcaatatataaagtatttaattcttaggggtttaacatgttttgcaaagtaggtttaagt |
152 |
Q |
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| T |
42011761 |
tgaaagtctcttaattttataaggactaaaaatatatacatcaatatatcaagtatttaattcttaggggtttaacatgttttgcaaagtaggtttaagt |
42011860 |
T |
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| Q |
153 |
ttgaatgcattttagttagtcaaattatgttggcatagagaatcatgtttnnnnnnnnctaaagttaaaacacttttttgaggttaaaccnnnnnnngtc |
252 |
Q |
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| T |
42011861 |
ttgaatgcattttatttaggcaaattatgttggcatagagaatcatgtttaaaaaaaactaaagttaaaacactttttt------------------gtc |
42011942 |
T |
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| Q |
253 |
ctttatcttgcatttggggtttatatttgtcctctaacaaaaaaggcgtgtat |
305 |
Q |
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| T |
42011943 |
ctttatcttgcatttggggtttatattggtcctctaacaaaaaagacgtgtat |
42011995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 42011741 - 42011781
Alignment:
| Q |
13 |
aagaatattgagacaaaaattgaaagtctcttaattttata |
53 |
Q |
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| T |
42011741 |
aagaatattgagacaaaacttgaaagtctcttaattttata |
42011781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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