View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_17 (Length: 295)
Name: NF1871_low_17
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 7131693 - 7131963
Alignment:
| Q |
7 |
agtgagatgaacaaagcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattag |
106 |
Q |
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| T |
7131693 |
agtgtgatgaacaaggcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattag |
7131792 |
T |
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| Q |
107 |
tgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaa |
206 |
Q |
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| T |
7131793 |
tgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaa |
7131892 |
T |
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| Q |
207 |
gactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgttta |
277 |
Q |
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| T |
7131893 |
gactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgttta |
7131963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 7154199 - 7154455
Alignment:
| Q |
19 |
aaagcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagaga |
118 |
Q |
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| T |
7154199 |
aaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaa |
7154298 |
T |
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| Q |
119 |
ccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcat |
218 |
Q |
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| T |
7154299 |
caatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgat |
7154398 |
T |
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| Q |
219 |
gattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtt |
275 |
Q |
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| T |
7154399 |
gataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgtt |
7154455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 278
Target Start/End: Original strand, 7141508 - 7141688
Alignment:
| Q |
98 |
taaaattagtgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatat |
197 |
Q |
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| T |
7141508 |
taaagttagtgatcaaagaaacattgaggttacacccaccttctcctttgttggttccaagattgagcacagaactaaccaaaatagatgggtatgatat |
7141607 |
T |
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| Q |
198 |
accaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttat |
278 |
Q |
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| T |
7141608 |
accaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttat |
7141688 |
T |
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