View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_18 (Length: 261)
Name: NF1871_low_18
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1907139 - 1906890
Alignment:
| Q |
1 |
ctgctattgatattatgcttcctattaccttagcattactacttcgact---tgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaa |
97 |
Q |
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|||||||||||||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1907139 |
ctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaa |
1907040 |
T |
|
| Q |
98 |
taagtggacaataaactaaggtgtttcataaatataaagctctgcaaaaaatgtagttttaaccaattttcttggccgaagttgttaaatagcggctata |
197 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1907039 |
taagtggactataaactaaggtgtttcataaatataaagcactgcgaaaaatgtagttttaaacaattttcttggccgaagttgttaaatagcggctata |
1906940 |
T |
|
| Q |
198 |
gcactacagcactatagtgcagtggaatttgaataaatcactattgttct |
247 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1906939 |
gcactacagcactatagtgcagtggaatttgaacaaatcactattgttct |
1906890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1891976 - 1891858
Alignment:
| Q |
1 |
ctgctattgatattatgcttcctattaccttagcattactacttcgact---tgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1891976 |
ctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaa |
1891877 |
T |
|
| Q |
98 |
taagtggacaataaactaa |
116 |
Q |
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||||||||| ||||||||| |
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| T |
1891876 |
taagtggactataaactaa |
1891858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1902906 - 1902788
Alignment:
| Q |
1 |
ctgctattgatattatgcttcctattaccttagcattactacttcgact---tgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1902906 |
ctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaa |
1902807 |
T |
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| Q |
98 |
taagtggacaataaactaa |
116 |
Q |
| |
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||||||||| ||||||||| |
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| T |
1902806 |
taagtggactataaactaa |
1902788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 1897413 - 1897281
Alignment:
| Q |
1 |
ctgctattgatattatgcttcctattaccttagcattactacttcgact---tgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaa |
97 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| | |||| ||| |
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| T |
1897413 |
ctgctattgatattatgcttcccattaccttggcattactacttctactctttgcagctaacttttccatccttaattgcaatgataagaggaaacaaaa |
1897314 |
T |
|
| Q |
98 |
taagtggacaataaactaaggtgtttcataaat |
130 |
Q |
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||||||||||||| ||| || |||||||||||| |
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| T |
1897313 |
taagtggacaatagactgagatgtttcataaat |
1897281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 1912798 - 1912679
Alignment:
| Q |
1 |
ctgctattgatattatgcttcctattaccttagcattactacttcgact---tgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaa |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||||||| ||||| ||||||||| |
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| T |
1912798 |
ctgctattgatattatgcttccaattaccttagcattactgcttctactctttgcagctaacttttccattcttaattgcaatgataacaggaaaacaaa |
1912699 |
T |
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| Q |
98 |
taagtggacaataaactaag |
117 |
Q |
| |
|
|||| |||||||| |||||| |
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| T |
1912698 |
taaggggacaatagactaag |
1912679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 1879621 - 1879509
Alignment:
| Q |
1 |
ctgctattgatattatgcttcctattaccttagcattactacttcgact---tgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaa |
97 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| | |||||||| |
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| T |
1879621 |
ctgctattgagattatgcttccaattaccttagcattactacttctactctttgcagctaacttttccatccttaattgcaatgataagagcaaaacaaa |
1879522 |
T |
|
| Q |
98 |
taagtggacaata |
110 |
Q |
| |
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||||||||||||| |
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| T |
1879521 |
taagtggacaata |
1879509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 1886206 - 1886127
Alignment:
| Q |
4 |
ctattgatattatgcttcctattaccttagcattactacttcgact---tgcagctaacttttccatccttaattgcaat |
80 |
Q |
| |
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||||||| |||||||| || | || ||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
1886206 |
ctattgagattatgctccccagtatcttagcattactacttctactctttgcagctaacttttccatccttaattacaat |
1886127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 1813252 - 1813293
Alignment:
| Q |
205 |
agcactatagtgcagtggaatttgaataaatcactattgttc |
246 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
1813252 |
agcactatagtacagtggaatttgaacaaatcactattgttc |
1813293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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